Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F23
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    30   2.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = -1

Query: 850 GXXGXRXXGXCXGGGGXXXGGXXXRGXXXXXGXXGXXGXXXXXXQXXXXAGXGG 689
           G  G    G C GGGG   GG    G     G  G  G            G GG
Sbjct: 123 GGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGG 176


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 738 PXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXPXXP 851
           P  P  P     P    PP   PPPP   P    P  P
Sbjct: 41  PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/54 (27%), Positives = 15/54 (27%)
 Frame = +3

Query: 690 PPXPAXXXXXXXWXXXPXXPXSPXXXXXPLXXXPPXXXPPPPXHXPXXRXPXXP 851
           PP P            P  P  P     P    PP   PP     P  R P  P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,484,423
Number of Sequences: 27780
Number of extensions: 120577
Number of successful extensions: 941
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)