Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F20
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 133 2e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 130 3e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 3e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.99
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.7
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 5.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 133 bits (322), Expect = 2e-32
Identities = 62/92 (67%), Positives = 72/92 (78%)
Frame = -1
Query: 630 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 451
+REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
+LLAREVLR+RG L R WDV+ DL+FYRDP
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = -3
Query: 757 MCLXFHRXLRSAXCXXFAAHTXXTXIAGRFTPGAFTNQIQAAF 629
+C+ R FAAHT T IAGRFTPG FTN I +
Sbjct: 76 VCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 130 bits (313), Expect = 3e-31
Identities = 61/92 (66%), Positives = 71/92 (77%)
Frame = -1
Query: 630 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 451
+REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
+LLAREVLRLRG + R W+V+ DL+FYRDP
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/43 (46%), Positives = 23/43 (53%)
Frame = -3
Query: 757 MCLXFHRXLRSAXCXXFAAHTXXTXIAGRFTPGAFTNQIQAAF 629
+C+ R FAAHT T IAGRFTPG FTN I +
Sbjct: 77 VCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = -1
Query: 657 LLLTRSKLHFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 478
L+ T K + P L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 477 SSHSIGLMWWLLAR 436
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.99
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = -1
Query: 657 LLLTRSKLHFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAI 493
L+LT + F+ +P + ++ D + T A + + LC+ +S RF D+A+
Sbjct: 42 LVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAV 100
Query: 492 PCNTKSSHSI 463
NTK +H I
Sbjct: 101 AANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 419 VVCFPVTSAGMLWLICSSTVTPEESEKD 336
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -1
Query: 675 DVSHQVLLLTRSKLHFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 502
+ + ++ L HF +LL+VL H T Y I I NT+ LRF D
Sbjct: 249 ETAQKIFLSLCFSQHFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,028
Number of Sequences: 5004
Number of extensions: 54097
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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