Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F20
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 130 9e-31
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 130 9e-31
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.2
06_03_0543 + 21967787-21970261 29 5.5
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.3
09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659 28 7.3
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 28 7.3
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 9.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 130 bits (315), Expect = 9e-31
Identities = 57/92 (61%), Positives = 70/92 (76%)
Frame = -1
Query: 630 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 451
F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
WLLAR VL++RG + +WDV+VDLFFYRDP
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -3
Query: 709 FAAHTXXTXIAGRFTPGAFTNQIQAAF 629
FA +T IAGR TPG FTNQ+Q +F
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 130 bits (315), Expect = 9e-31
Identities = 57/92 (61%), Positives = 71/92 (77%)
Frame = -1
Query: 630 FREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 451
F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLF 179
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
WLLAR VL++RG + +WDV+VDLFFYRDP
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 37.5 bits (83), Expect = 0.012
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -3
Query: 709 FAAHTXXTXIAGRFTPGAFTNQIQAAF 629
FA +T IAGR TPG FTNQ+Q +F
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659
Length = 522
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 681 LRDVSHQVLLLTRSKLHFREPRLLIVLDP 595
L D H +LLL K + PRL +V DP
Sbjct: 88 LYDSHHGLLLLRHHKCEYFNPRLFLVCDP 116
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 467 EWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRKCSLDL 646
EW++L+L G A+++ SGE L A G V+G A T +R+ S
Sbjct: 72 EWDELLLSGAALASESSGELQLVAASPG---DHNQVVGGGGGANYRTTATAAARR-SYRG 127
Query: 647 VSKSTWCETSRNXRXTGVRG 706
V + W + + R T RG
Sbjct: 128 VRRRPWGKFAAEIRDTRRRG 147
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +3
Query: 354 RGHGRRTNQPQHPSAGHGEAHHEASTLH 437
R HG + H GHG +HH +H
Sbjct: 68 RAHGDHHHGHHHHHHGHGHSHHHGPEVH 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,511,630
Number of Sequences: 37544
Number of extensions: 387207
Number of successful extensions: 1057
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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