Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F18
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 174 8e-44
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 171 6e-43
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 30 2.0
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801... 30 2.0
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 30 2.6
06_03_0543 + 21967787-21970261 29 6.0
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.9
10_04_0010 - 7487455-7489490,7489569-7489980 28 7.9
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988... 28 7.9
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 28 7.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 174 bits (423), Expect = 8e-44
Identities = 78/134 (58%), Positives = 100/134 (74%)
Frame = -1
Query: 718 VXKFXAHTGXTPIAGRFTPGAFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIA 539
V KF +TG IAGR TPG FTNQ+Q +F E RLLI+ DP DHQPI E++ NIP IA
Sbjct: 91 VLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIA 150
Query: 538 LCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 359
C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRD
Sbjct: 151 FCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210
Query: 358 PEESEKDEQQAKEQ 317
PEE+++ E++A Q
Sbjct: 211 PEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 171 bits (416), Expect = 6e-43
Identities = 76/130 (58%), Positives = 97/130 (74%)
Frame = -1
Query: 718 VXKFXAHTGXTPIAGRFTPGAFTNQIQAAFREXRLLIVLDPAQDHQPITEASYVNIPVIA 539
V KF +TG IAGR TPG FTNQ+Q +F E RLLI+ DP DHQPI E++ NIP IA
Sbjct: 91 VLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIA 150
Query: 538 LCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 359
C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRD
Sbjct: 151 FCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210
Query: 358 PEESEKDEQQ 329
PEE+++ E++
Sbjct: 211 PEEAKEQEEE 220
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 LSCNIINQCR-VFMQHSSLERIHPTRALRWRRLVRWQLC-STHLV 150
+S I N C +F Q LE + P + WRR + W LC S H+V
Sbjct: 135 ISNAITNLCATIFGQLWRLEPLLPEKKTMWRREMDWLLCVSDHIV 179
>01_06_1346 -
36478844-36479266,36479369-36479728,36479820-36480110,
36480193-36480267,36482292-36482446,36482549-36482665,
36482757-36482976
Length = 546
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 34 IINQCR-VFMQHSSLERIHPTRALRWRRLVRWQLC-STHLV 150
I N C +F Q LE + P + WRR + W LC S H+V
Sbjct: 108 ITNLCATIFGQLWRLEPLPPEKKAMWRREMGWLLCVSDHIV 148
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHNCHRTSRRHRSA 96
T C C P + VCPG+R V+ N R+ A
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKANYDACLLRYSDA 312
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 460 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 371
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 19 WLSCNIINQCRVFMQHSSLERIHP-----TRALRWRRLVRWQLCSTHLVPGQTILLEQGV 183
W I N+C ++ H SL+ I R RW L++ H PG+ ++ +
Sbjct: 272 WRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADAL 331
Query: 184 LQKQELQRVQQAG 222
+K ++ G
Sbjct: 332 SRKSHCNTLEVRG 344
>02_02_0405 +
9885202-9885415,9885515-9885861,9885941-9886516,
9886599-9887003
Length = 513
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 52 VFMQHSSLERIHPTRALRWRRLVRWQLCST-HLV 150
VF +H LE + P RW++ V W L T H+V
Sbjct: 113 VFGEHRKLEPMAPDTKERWKKEVGWLLSVTDHIV 146
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 LERIHPTRALRWRRLVRWQLCSTH-LVPGQTILLEQGVLQKQELQRVQQA 219
+ R TR RWRRL+ W H + G +LL+ V +E R +A
Sbjct: 686 VRRHRETRRGRWRRLLLWWPLGAHGALAGAGVLLDAAVEGGRETARQARA 735
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,654,305
Number of Sequences: 37544
Number of extensions: 396023
Number of successful extensions: 1168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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