Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F15
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    30   0.35 
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   3.3  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.3  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   7.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   10.0 
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   10.0 
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   10.0 

>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 274 MESTDPQCHILQHRRPRLPLMQLEAPCSQARCAGRVVPLVNNSYIRSWIRT 426
           M+S   Q ++L   RP LPL     P    R A  ++PLVN S   S + T
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQP---TRFASVLMPLVNTSQGASLLLT 135


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -2

Query: 486 ILICIMFFLLYFEHVQTRHVSPDPTSDVAVVYE 388
           ++ C ++   +F + +     PD  +DV+++YE
Sbjct: 309 LITCALYDEFWFRYARWMSAQPDHLNDVSIIYE 341


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 538 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNT 663
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 299 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 192
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 525  YAAFTLLWRTATSILICIMFFLL 457
            YA   LLW +   +L+C+M  L+
Sbjct: 968  YATDNLLWASLEGMLLCVMAILI 990


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 446 CSKYSKKN--MMQIRILVAVRHKSVNAAYVSRVITSLLPRWKI*ATKKSSHL 595
           C KYSKKN  ++ I I+  ++  S++A  +    TS   R +I   K S HL
Sbjct: 23  CFKYSKKNTRLVFIFIVKMLKQLSISAGNLLNKGTSETLRNEITTKKVSIHL 74


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 214 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 351
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,402
Number of Sequences: 5004
Number of extensions: 62893
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)