Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F15
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.58
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.77
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.77
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 1.3
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 4.1
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 4.1
U41508-8|AAG00026.4| 553|Caenorhabditis elegans Abnormal catech... 28 9.4
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 28 9.4
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 28 9.4
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 28 9.4
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 341 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 237
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -3
Query: 356 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 186
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 185 GRQHCVTVDCCCHGS 141
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -3
Query: 356 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 186
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 185 GRQHCVTVDCCCHGS 141
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 143 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 295
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -2
Query: 585 DFFVAQIFHRGNRDVITRLTYAAFTLLWRTATSILICIMFFLLYFEHVQTRHVSPDPTSD 406
DF FH N T L + F LW + L+CI + F HV+ ++ + +
Sbjct: 45 DFCEQTTFHGVNMIFTTSLYWVRF--LWVVVS--LVCICLCMYSFSHVKDKYDRKEKIVN 100
Query: 405 VAVVYE 388
V +V+E
Sbjct: 101 VELVFE 106
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -2
Query: 585 DFFVAQIFHRGNRDVITRLTYAAFTLLWRTATSILICIMFFLLYFEHVQTRHVSPDPTSD 406
DF FH N T L + F LW + L+CI + F HV+ ++ + +
Sbjct: 45 DFCEQTTFHGVNMIFTTSLYWVRF--LWVVVS--LVCICLCMYSFSHVKDKYDRKEKIVN 100
Query: 405 VAVVYE 388
V +V+E
Sbjct: 101 VELVFE 106
>U41508-8|AAG00026.4| 553|Caenorhabditis elegans Abnormal
catecholamine distributionprotein 1, isoform a protein.
Length = 553
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -2
Query: 561 HRGNRDVITRLTYAAFTLLWRTATSILICIMFFLLYFEHVQTRHVSPDPTSDVAVVYEWN 382
+R NR ++ + Y A L T+++ I +LL EH + S V +W
Sbjct: 11 YRNNRKILLLIVYIALFLDNMLLTTVVPIIPEYLLRMEHPNETDILFSHNSQKRVKRQWE 70
Query: 381 D 379
D
Sbjct: 71 D 71
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 663 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 562
C ++ M S+V++ N+SQN++ DD Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 663 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 562
C ++ M S+V++ N+SQN++ DD Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 663 CISVSKCHVMKSTVKLGNMSQNVRCDDFFVAQIF 562
C ++ M S+V++ N+SQN++ DD Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,955
Number of Sequences: 27780
Number of extensions: 379070
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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