Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F15
(832 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 26 0.37
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 8.0
DQ435330-1|ABD92645.1| 132|Apis mellifera OBP13 protein. 22 8.0
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 8.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.0
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 26.2 bits (55), Expect = 0.37
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 350 HVHKPGAPAVSFHS*TTATS 409
H H+PGAPA + + TT T+
Sbjct: 647 HPHEPGAPATTITTITTTTT 666
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 431 VVDRLCLIVFTLFTVLATIVILC 453
>DQ435330-1|ABD92645.1| 132|Apis mellifera OBP13 protein.
Length = 132
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 622 DCRLHHMAFTNGNTTRNK 675
DC L + F N +TT N+
Sbjct: 64 DCMLKKVGFVNADTTFNE 81
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.8 bits (44), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 740 TDPLLRSKFHLRFALALISCNSLLR 666
++ + SKF L F L+S N LLR
Sbjct: 216 SESTIDSKFGLGFTTDLLSYNILLR 240
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 499 VVDRLCLIVFTLFTVLATIVILC 521
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 543 VITRLTYAAFTLLWRTATSILIC 475
V+ RL FTL AT +++C
Sbjct: 499 VVDRLCLIVFTLFTVLATIVILC 521
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,035
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 32
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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