Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F13
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   104   2e-23
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   102   8e-23
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.002
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   0.85 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.5  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   4.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   6.0  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  104 bits (249), Expect = 2e-23
 Identities = 51/88 (57%), Positives = 58/88 (65%)
 Frame = -1

Query: 860 SXPFGQRXXXXFXXXTGXTXIAGRFTXGAFXNQIQXAFREPRLLIVLDPAQDHQPITEAS 681
           S P+G R    F   TG T IAGRFT G F N I   +REPRL+IV DP  D Q I EAS
Sbjct: 82  SRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEAS 141

Query: 680 YVNIPVIALCNTDSPXRFVDIAIPCNTQ 597
           +VNIPVIALC+TDS    VD+AIP N +
Sbjct: 142 FVNIPVIALCDTDSILNHVDVAIPINNK 169



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 598 KSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*P 473
           K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FY  P
Sbjct: 169 KGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  102 bits (244), Expect = 8e-23
 Identities = 59/118 (50%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
 Frame = -1

Query: 851 FGQRXXXXFXXXTGXTXIAGRFTXGAFXNQIQXAFREPRLLIVLDPAQDHQPITEASYVN 672
           +G R    F   TG T IAGRFT G F N I   +REPRL++V DP  D Q I EAS+VN
Sbjct: 84  YGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVN 143

Query: 671 IPVIALCNTDSPXRFVDIAIPCNT---QVFPLYWF----DVV-VVGT*SAEASWCASP 522
           IPVIALC+TDS    VDIAIP N    +   L W+    +V+ V GT S  A W   P
Sbjct: 144 IPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMP 201



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = -2

Query: 598 KSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*P 473
           K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FY  P
Sbjct: 168 KGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 740 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPXRFVDIAIPCN 603
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 495 STTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLGVAWDSNVHKSXWGVC 647
           S   S RW  G+T  S     A++  I PIEWE +G    + + +    VC
Sbjct: 439 SNNISVRWFLGAT--SAQNRNASSEAILPIEWEAVGNLSSNEMTRVGDSVC 487


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 489 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 587
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 537 VVCFPVTSAGMLWLICSSTRDPEESEKD 454
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 583 IGLMWWLLAREVLRLRGVLPRDQRWD 506
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,933
Number of Sequences: 5004
Number of extensions: 49352
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)