Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F13
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   106   2e-23
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   3.2  
L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid desa...    29   5.7  
AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical ...    29   5.7  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.9  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.9  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  106 bits (254), Expect = 2e-23
 Identities = 45/86 (52%), Positives = 58/86 (67%)
 Frame = -1

Query: 854 PFGQRXXXXFXXXTGXTXIAGRFTXGAFXNQIQXAFREPRLLIVLDPAQDHQPITEASYV 675
           P+ QR    F   TG T I GRF+ G   NQIQ  F+EPRLL++ DP  DHQ +TEASYV
Sbjct: 81  PYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYV 140

Query: 674 NIPVIALCNTDSPXRFVDIAIPCNTQ 597
            +PVI+  NT+SP + +DI +PCN +
Sbjct: 141 GVPVISFVNTESPLKLIDIGVPCNNK 166



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
 Frame = -2

Query: 598 KSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFFYP*P 473
           K   SIGLMWW+LARE+L LRG + R   +     +++ DL+FY  P
Sbjct: 166 KGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDP 212


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 331 CCTRCSSCFWSTPCSRRMVCP 269
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid
           desaturase protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 SNYFWFSWYHSLFPGLLFILFTFFR 474
           SN+FW+ W    F GL+ ++ T+ +
Sbjct: 257 SNWFWYYWVPLSFFGLMLVIVTYLQ 281


>AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical
           protein Y67H2A.8 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 400 SNYFWFSWYHSLFPGLLFILFTFFR 474
           SN+FW+ W    F GL+ ++ T+ +
Sbjct: 257 SNWFWYYWVPLSFFGLMLVIVTYLQ 281


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 282  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 377
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 282  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 377
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,242
Number of Sequences: 27780
Number of extensions: 299125
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)