Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F09
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 1.9
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.3
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.7
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 5.7
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.7
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 9.9
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.9
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = -3
Query: 710 PPXPCDXRXHQ--PDHQIPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAY 537
PP P R H P P TP P SIS P P AP P + + PS+
Sbjct: 76 PPAPRPPRRHHRIPPPPPPLLPTPPPPP-ASISPTPAPPLPPPPAPAPPPTPTPKFPSSS 134
Query: 536 LTPSSLGMXKGVSPPYF 486
PS + P+F
Sbjct: 135 ANPSPPDAYPFTNYPFF 151
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 82 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 183
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 74 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 220
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/80 (31%), Positives = 28/80 (35%)
Frame = -3
Query: 764 PPLXXXAXXLAVSPLCIKPPXPCDXRXHQPDHQIPXFHTPTTPDLTSISINPLTPY*KEF 585
PPL LA SP PP P P +P P T+ + P P
Sbjct: 64 PPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSP-LPPTTTTTTPPTAP----- 117
Query: 584 APGLKPPLSSEAPSAYLTPS 525
P PP APS Y PS
Sbjct: 118 VPAAAPP--PTAPSPYSAPS 135
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 241 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 62
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 61 ILHSF 47
+LHSF
Sbjct: 1408 LLHSF 1412
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -3
Query: 653 HTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPY 489
++PT+P TS +P +P +P P PS +PSS SP Y
Sbjct: 1780 YSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTY 1836
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 442 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 353
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,056,511
Number of Sequences: 37544
Number of extensions: 425519
Number of successful extensions: 1187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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