Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F08
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783     29   5.6  
01_01_0278 - 2281536-2281977,2282523-2282926                           29   5.6  

>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
          Length = 1439

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 303 VGDEAPERRGRRAVPNLATXXEGQRRLTPTSTP 401
           VG+EAP   GRRA P +A+    +R  + + +P
Sbjct: 61  VGEEAPRGSGRRAAPVVASRRRRRRSRSRSRSP 93


>01_01_0278 - 2281536-2281977,2282523-2282926
          Length = 281

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -3

Query: 344 DRAPPPPLRSLISNLSNTCDLT 279
           DR P P   SLISN SNT  LT
Sbjct: 199 DRPPSPSQSSLISNQSNTSTLT 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,625
Number of Sequences: 37544
Number of extensions: 187148
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)