Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_F08
         (793 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ486143-1|ABF50839.1| 1317|Drosophila melanogaster RhoGAP18B-PC...    30   4.2  
DQ486142-1|ABF50838.1|  752|Drosophila melanogaster RhoGAP18B-PD...    30   4.2  
AE014298-2804|AAF48921.1| 1063|Drosophila melanogaster CG7502-PA...    30   4.2  

>DQ486143-1|ABF50839.1| 1317|Drosophila melanogaster RhoGAP18B-PC
            protein.
          Length = 1317

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 353  KVRDRAPPPPLRSLISNLSNTCDLTPXPECSCE 255
            ++R  APPPP +   SN ++    +    CSCE
Sbjct: 913  RIRRPAPPPPAQLATSNTTSLAPRSDDSGCSCE 945


>DQ486142-1|ABF50838.1|  752|Drosophila melanogaster RhoGAP18B-PD
           protein.
          Length = 752

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 353 KVRDRAPPPPLRSLISNLSNTCDLTPXPECSCE 255
           ++R  APPPP +   SN ++    +    CSCE
Sbjct: 348 RIRRPAPPPPAQLATSNTTSLAPRSDDSGCSCE 380


>AE014298-2804|AAF48921.1| 1063|Drosophila melanogaster CG7502-PA
            protein.
          Length = 1063

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 353  KVRDRAPPPPLRSLISNLSNTCDLTPXPECSCE 255
            ++R  APPPP +   SN ++    +    CSCE
Sbjct: 913  RIRRPAPPPPAQLATSNTTSLAPRSDDSGCSCE 945


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,166,053
Number of Sequences: 53049
Number of extensions: 280551
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)