Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F05
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 182 6e-47
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 119 4e-28
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 95 1e-20
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 84 3e-17
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 65 1e-11
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 36 0.005
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 5.7
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 5.7
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 26 7.5
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 7.5
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 182 bits (443), Expect = 6e-47
Identities = 74/140 (52%), Positives = 109/140 (77%)
Frame = -2
Query: 675 HLYNQWNQTTTXSQWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSCGTDWDTVRKC 496
++Y W + + WC++HF+H+K +++ R++RQQL +I+ +Q++ L S +DWD VR+
Sbjct: 973 NIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESV-SDWDIVRRV 1031
Query: 495 ICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHC 316
+CSAYF QAA KGIGEYV+ R+GMPCHLH TS+L+GLG PDYV+YHEL +T++EYM+
Sbjct: 1032 LCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNI 1091
Query: 315 VTAVDARWLAELGPMFFSVQ 256
VT+VD WLAE G +++SV+
Sbjct: 1092 VTSVDPYWLAEFGGVYYSVK 1111
Score = 33.1 bits (72), Expect = 0.049
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 779 SXPSXFYRXQXREEEADAVKEKXQXP 702
S PS FYR + R EE+DA +EK P
Sbjct: 939 SVPSVFYRPKERAEESDAAREKFNVP 964
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 119 bits (287), Expect = 4e-28
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = -2
Query: 675 HLYNQWNQTTTXSQWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSCGTDWDTVRKC 496
++Y W WC EH++ A+ MR+ +VR+QL ++ + R P+VSCG + + +
Sbjct: 993 NVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRA 1052
Query: 495 ICSAYFQQAA-RLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMH 319
+CS YF A R G Y P ++HP+ LFG + ++V+YHEL T++EYMH
Sbjct: 1053 LCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGK--AAEWVIYHELIQTSKEYMH 1110
Query: 318 CVTAVDARWLAELGPMFFSVQGDRQI 241
V+ V+ +WL E+ P FF Q+
Sbjct: 1111 TVSTVNPKWLVEVAPTFFKFANANQV 1136
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Frame = -2
Query: 675 HLYNQWNQTTTXSQWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSCGTD-WDTVRK 499
H++N+W T W E+F+ K++ + R+VR QL ++ ++ + LV+ ++ D ++K
Sbjct: 902 HIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKK 961
Query: 498 CICSAYFQQAARLKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYM 322
I + YF AARL G+ Y ++ ++HP+S++ P ++Y EL +T +EY
Sbjct: 962 AITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEK--KPKVIIYFELVLTTKEYC 1019
Query: 321 HCVTAVDARWLAELGPMFFSVQGDRQIESRQ 229
+T + WL E+ P +F + +++ Q
Sbjct: 1020 RQITEIQPEWLLEISPHYFKPENIEELQKTQ 1050
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 83.8 bits (198), Expect = 3e-17
Identities = 41/144 (28%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Frame = -2
Query: 675 HLYNQWNQTTTXSQWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSCGTD----WDT 508
++Y+ + + WC HF+ +A+ VR+QL+ +++Q + L+S D +
Sbjct: 566 NVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVN 625
Query: 507 VRKCICSAYFQQAARLKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAR 331
+R+ + S +F Q A+ G+ YV + LHP+ GL +P++VVY+E +T +
Sbjct: 626 IRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSC---GLSVTPEWVVYNEFVLTTK 682
Query: 330 EYMHCVTAVDARWLAELGPMFFSV 259
++ VTA+ WL EL P ++ +
Sbjct: 683 SFIRNVTAIRPEWLIELAPNYYDL 706
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 64.9 bits (151), Expect = 1e-11
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Frame = -2
Query: 636 QWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSC-GTDWDTVRKCICSAYFQQAARL 460
QWC+++F++ +A++ + ++R+QL++ + L S + + + S Y A L
Sbjct: 592 QWCSQNFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSENLLLSFLSGYITNTALL 651
Query: 459 KGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAEL 280
G Y +HP+S+LFG + ++YHEL T + Y+ V+++ + WL +
Sbjct: 652 HPDGSYRTIIGNQTISIHPSSSLFGK--KVEAIMYHELVFTTKSYVRGVSSIRSNWLNAV 709
Query: 279 GPMFFS 262
P + +
Sbjct: 710 APHYLA 715
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 636 QWCTEHFVHAKAMRKVREVRQQLKDILQQQRLPLVSC--GTDWDTVRKCICSAYFQQAAR 463
QWC +++++ + +R+ ++R L L + +P +D + KC+ + + A
Sbjct: 524 QWCRKNYLNYQTLRQALDIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRNVAH 583
Query: 462 LKGIGEY 442
L+ G Y
Sbjct: 584 LQNDGSY 590
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 636 QWCTEHFVHAKAMRKVREVRQQLKDILQ 553
QWC E +H ++++R+ R +L + Q
Sbjct: 1107 QWCEEMHLHYTTLQQIRQNRNELSEAAQ 1134
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 480 FQQAARLKGIGEYVNCRTGMPCHLHPTSA 394
FQ R+KG Y + P H HPT+A
Sbjct: 35 FQIQLRIKGYAVYHHGFLSSPSHKHPTTA 63
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 411 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCV 313
LHP FGL C ++ + A+ Y+HCV
Sbjct: 119 LHPVG--FGLACHLGVLLNLPVVGVAKNYLHCV 149
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 217 ASLRLSRFDLPVSLXGEEHGPQLGQPARVHGGDAVHV 327
A+L FD+P L G G +LG+ HG A V
Sbjct: 142 AALGFITFDVPGVLVGSAAGAKLGRIRDTHGKSAYSV 178
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 495 ICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSP 370
IC + FQ A +GI E +NC + H + + +G SP
Sbjct: 1120 ICLSIFQ-CADYRGINEILNCWESIIKTTHENAIISPVGSSP 1160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,637
Number of Sequences: 5004
Number of extensions: 40334
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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