Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_F03
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 237 7e-63
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 40 0.002
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 32 0.60
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 1.8
09_04_0326 - 16694715-16695857 29 5.6
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 28 7.4
11_04_0354 + 16697571-16700256,16700335-16700759 28 9.8
05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033 28 9.8
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 28 9.8
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 237 bits (580), Expect = 7e-63
Identities = 118/186 (63%), Positives = 135/186 (72%)
Frame = -2
Query: 688 PRVGDFNESXLLXWKVTXGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 509
PRVGDFNES T GHPVF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSA
Sbjct: 227 PRVGDFNESTYYMEGNT-GHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSA 285
Query: 508 TIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGS 329
T+ GE SE MW +EARNAAI N YF +INRVG E FPN FTS DGKP H D G FYGS
Sbjct: 286 TV-GEL-SEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGS 343
Query: 328 SYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELD 149
S+F PD P LSR RDGL+I+ +DLNL RQI+D+ + MT R D Y + LS+ L+ D
Sbjct: 344 SHFSAPDASCTPSLSRYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPD 403
Query: 148 YKPQVV 131
+KPQV+
Sbjct: 404 FKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 39.9 bits (89), Expect = 0.002
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 6/157 (3%)
Frame = -2
Query: 634 GHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEYMWN 470
G F T+Y I V IC+ + GAEI+F P+A I E S W
Sbjct: 144 GFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSREHWK 202
Query: 469 VEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCGPDGVRCP 293
+ A N A NR+G E E H + + F+G+S+ GP G
Sbjct: 203 RVMQGHAGANLVPLVASNRIGRETVETE---------HGESTITFFGNSFIAGPTGEIVK 253
Query: 292 GLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMY 182
+ + +L+A DL+ + R + +R D+Y
Sbjct: 254 LANDKDEDVLVAEFDLDEIKSTRHGWGIFRDRRPDLY 290
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 31.9 bits (69), Expect = 0.60
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Frame = -2
Query: 628 PVFATRYGKIAVNICF-GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNA 452
PV+ T GKI IC+ R +L M+ + G +I P+A + W +
Sbjct: 178 PVYDTPIGKIGAVICWENRMPLLRTAMYAK-GVQIYCAPTADFSPS------WQASMTHI 230
Query: 451 AITNCYFTAAIN----RVGYEEFPN-EFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGL 287
A+ F + N R Y P F D +P+ + + ++ G S P G G
Sbjct: 231 AVEGGCFVLSANQFCRRKNYPPAPEYTFGGLDEEPSPESV-IWPGGSSIVSPSGTVLAGP 289
Query: 286 SRTRDGLLIA 257
+ +GLL A
Sbjct: 290 NYEGEGLLTA 299
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -2
Query: 523 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 344
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 343 LFYG 332
YG
Sbjct: 103 KLYG 106
>09_04_0326 - 16694715-16695857
Length = 380
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 702 AMLPDHVSGVLMTXQCSKVCPNASRXFL 785
A+ P HV G + CS +CP+ FL
Sbjct: 210 ALTPVHVKGAIYWIVCSSLCPDPPNAFL 237
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 266 QAVSGAGQTGAPNAVGAAEVARSVEQAQVFVCRFPVSRSELVRELLVADSVDGRCEVAV 442
+ SG P+A+ A E + E ++ V R P LVR + + +S + E AV
Sbjct: 342 KCASGGCAGAVPSALAAVEALAASEAGRMAVARAPGGTRALVRHVFMMNSSNDGSEHAV 400
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 197 LGHVITTSVSDLSVQVQVHGRD*QAVSGAGQTGAPNAVG 313
LG V+ TSVS+LS Q+Q+ +SG G N VG
Sbjct: 331 LGGVLPTSVSNLSAQLQLLYVGFNKISGNIPFGISNLVG 369
>05_03_0526 + 15021174-15021363,15021743-15021843,15021893-15022033
Length = 143
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 257 GRGLEPEQTDQRQTLLLHDPTPGHVREQSQQSTRAGLQ 144
G+G EP+ D ++ L ++D PG E Q S+ AGL+
Sbjct: 89 GKGHEPDWRDLQELLRIYD--PGTSTECKQASSGAGLR 124
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 27.9 bits (59), Expect = 9.8
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Frame = +2
Query: 281 AGQTGAPNAVGAAEVA-----RSVEQAQVFVCRFPVSRSELVRELL------VADSVDGR 427
A + PNA+ AAE+ S+ Q ++ + E + E L +A+ R
Sbjct: 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANKYLSR 184
Query: 428 CEVAVRDSCVPSF--NVPHVLAAAFSGDRR 511
+++ C P + +PH +A AFSG+RR
Sbjct: 185 SHLSI--DCRPDWMTRIPHYIAVAFSGERR 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,013,978
Number of Sequences: 37544
Number of extensions: 409847
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -