Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E23
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   5.0  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    26   6.6  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    26   8.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.7  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   8.7  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = -1

Query: 654  PRXGDXLQTCIRP---VMTYASVVFAHAARTLKSFQIIQSRFCRIAVGAPWFVRNVDLHD 484
            PR  D  Q CI P   V    +V    A   L  +  I S      +G  ++   +DL +
Sbjct: 1255 PRNQDTKQPCIVPLNVVQKSGAVQKLEAPILLPPYDSISSVS---TLGDKYWNLKIDLDN 1311

Query: 483  DLDLESISKYLQSASMRHFDKAARHENPL 397
            + D   + +  Q+ ++  +D+ +  E PL
Sbjct: 1312 NSDYRELLRESQTLTLMPYDRTSSKEEPL 1340


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 259 SSNPPLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 119
           SS+  L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 234 FVASGGFDENGDRCLKY--LKAPLVD 305
           F A+G FDENG +  KY  L  PL D
Sbjct: 223 FPATGNFDENGVKGGKYFALNVPLED 248


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 330 KHVISDPPDPLTVLLGTSSTGH 265
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = -3

Query: 343 STSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPPLATKGSTSKLTLRHSPLSFSPDLLSGS 164
           +T+P  R +  + STN      K  S       L   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 163 RFRSGGRFC 137
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,294
Number of Sequences: 5004
Number of extensions: 48180
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)