Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E23
         (930 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340...    31   0.99 
01_06_0475 + 29610268-29610711                                         31   0.99 
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    30   2.3  
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    30   2.3  
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    29   5.3  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    29   7.0  

>11_01_0443 -
           3399226-3399242,3399551-3399731,3399847-3399936,
           3400377-3400459,3400540-3400667,3400747-3401002,
           3401094-3401199,3401300-3401366,3401467-3401580,
           3401811-3401889,3402189-3402359,3403135-3403267,
           3403874-3404033,3404119-3404261
          Length = 575

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -3

Query: 343 STSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPPLATKGSTSKLTLRH 203
           S+S  T+H  SS  T  A    KH S  +  PP  T   TS+LT  H
Sbjct: 521 SSSEVTKH--SSEVTKHASEVTKHTSEVTKQPPELTSSHTSQLTPAH 565


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -3

Query: 268 SPFSSNPPLATKGSTSKLTLRHSPLSFSPD 179
           SP SS+PP     S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 465 ISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPK-HVISDP 310
           +S Y +S SM  F  +AR   P++ ++ NY+          RRR +  + SDP
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -3

Query: 304 STNGAFRYFKHRSPFSSNPPLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 125
           S NG       R P SS   L  +G    L+L  S   F P   SG+R RSGG       
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256

Query: 124 LLGFVLATS-SGLSPVSSPTKVRV 56
             G V+    +GL   +SP ++ V
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQIVV 280


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 244 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 74
           L TKG    +T+ H P+ FSP         S G   E+ L      + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = -1

Query: 585 HAARTLKSFQIIQSRFCRIAV-GAPWFVRNVDLHDDLDLESISKYLQSASMRHFD--KAA 415
           +A   L +    +++F ++AV GAP ++R VDL      + +   LQ     HF   K  
Sbjct: 106 NALAALAAASSSKAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLG 164

Query: 414 RHENPLI--VAAGNYIPDPADR 355
             E  L+  V+   Y+P   D+
Sbjct: 165 NEEMKLVDAVSGNEYVPTYEDK 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,356,149
Number of Sequences: 37544
Number of extensions: 386264
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)