Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E20
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.84 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 436 RSWXSRETQACHNGT 392
           RSW +RE+Q C+N +
Sbjct: 353 RSWVTRESQICNNSS 367


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = -3

Query: 251 NVKKEPENGDGVEEGSRKRTASTAN--------AEDPDVSIEVKQE 138
           ++ K P N +G+E  S +R  S A         A D D+S+   Q+
Sbjct: 190 SLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQ 235


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -3

Query: 422 PRNSSVS*WNETRTPENGVSDRKPHKKKILIQQGKLDKYGXPN 294
           PR +  + WNE      G+ D  P+  K++       + G  N
Sbjct: 569 PRTTYCAFWNEFLPKLKGIPDPXPNTCKVIASSVSAGEEGLGN 611


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 398 WNETRTPENGVSDRKPHKKKILI 330
           W+  R P    S    H+KK+L+
Sbjct: 46  WSRPREPAQTTSKAGIHRKKVLL 68


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 398 WNETRTPENGVSDRKPHKKKILI 330
           W+  R P    S    H+KK+L+
Sbjct: 168 WSRPREPAQTTSKAGIHRKKVLL 190


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 162 IGIFCVSCACRSLSAAFLDTVTILRFFLNI 251
           I IFC + + R+ S  F+  + I  FF+ I
Sbjct: 70  IWIFCAAKSLRTPSNMFVVNLAICDFFMMI 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,195
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)