Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E19
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   132   4e-31
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   132   4e-31
07_01_0761 + 5849466-5850677                                           31   0.96 
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   9.0  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  132 bits (318), Expect = 4e-31
 Identities = 62/99 (62%), Positives = 74/99 (74%)
 Frame = -3

Query: 572 PVRHXKGLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
           P +  +GLRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295

Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 276
           + A TE+D +EK ITPMGGFPHYG V  D++M +G   G
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = -1

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 137
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = -2

Query: 711 EMGQGHXEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTXQG 553
           + G    E  IPVD+VF +DEMID I            +RW   +LPRKT +G
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  132 bits (318), Expect = 4e-31
 Identities = 62/99 (62%), Positives = 74/99 (74%)
 Frame = -3

Query: 572 PVRHXKGLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
           P +  +GLRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG     K G+   
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295

Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 276
           + A TE+D +EK ITPMGGFPHYG V  D++M +G   G
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 42/60 (70%), Positives = 48/60 (80%)
 Frame = -1

Query: 292 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 113
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = -2

Query: 711 EMGQGHXEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTXQG 553
           + G    E  IPVD+VF +DEMID I            +RW   +LPRKT +G
Sbjct: 196 DYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG 248


>07_01_0761 + 5849466-5850677
          Length = 403

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 605 VSLLVGTQRSYPVRHXKGLRKVACI--GAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRI 432
           V+LLVG  R   V        V+ +  G  HP   SFT+ RA      H      K+ RI
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEH------KVLRI 182

Query: 431 GQGIH 417
           G  +H
Sbjct: 183 GTVVH 187


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
 Frame = -3

Query: 512 RVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDLS 363
           +V F    +   GY H + +N ++  I  G          IH+ D   +      E  LS
Sbjct: 361 QVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYLS 420

Query: 362 EKSITPMGGFPHYGEVNN 309
           EKS  P+  FP    V++
Sbjct: 421 EKSNIPIPPFPDSSSVSS 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,135,959
Number of Sequences: 37544
Number of extensions: 409495
Number of successful extensions: 927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)