Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E18
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643...    29   4.7  
01_01_0278 - 2281536-2281977,2282523-2282926                           29   4.7  
12_02_1174 - 26696869-26698191                                         28   8.2  

>03_03_0181 +
           15162681-15162806,15164026-15164172,15164269-15164355,
           15165659-15165793,15165883-15165987,15166079-15166170,
           15166259-15166364,15166463-15166549,15166653-15167084
          Length = 438

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 141 GIHTAATTADGSAVLLGRNIIKSASXTINSELLKYNRNLF 22
           G HT+A T+  S  L+G    +++  TI  E L Y+RN +
Sbjct: 30  GFHTSAATS-ASQTLIGALYFRTSRWTIPWERLNYSRNQY 68


>01_01_0278 - 2281536-2281977,2282523-2282926
          Length = 281

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 TNQAMXDXRXPPPXLRSLISNLSNTCDLT 300
           T   + D R P P   SLISN SNT  LT
Sbjct: 192 TTVNLTDDRPPSPSQSSLISNQSNTSTLT 220


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 777 PXPPPXIPXXPXPXXXPPXAXXP 845
           P PPP +P  P P   PP    P
Sbjct: 146 PQPPPSLPPPPPPPPPPPPPRPP 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,314
Number of Sequences: 37544
Number of extensions: 177272
Number of successful extensions: 922
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)