Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E11
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   128   1e-30
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  128 bits (308), Expect = 1e-30
 Identities = 71/140 (50%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
 Frame = -3

Query: 772 PRXXFVIXSRPFGQRALXXFPAHTRXYAYCGTFHTRCFL--LTRSQAAFP*TSSLDCIDP 599
           P    VI SRP+G RA+  F AHT   A  G F    F   +TR+         +   DP
Sbjct: 74  PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE---PRLIIVTDP 130

Query: 598 AQDHQPITEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 419
             D Q I EAS+VNIPVIALC+ DS L  VD+AIP N K   SIGL W+LLAREVLRLRG
Sbjct: 131 RADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRG 190

Query: 418 VLPRDQRWDVVVDLFFYRXP 359
            + R   W+V+ DL+FYR P
Sbjct: 191 NISRTTAWEVMPDLYFYRDP 210


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (306), Expect = 2e-30
 Identities = 70/140 (50%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
 Frame = -3

Query: 772 PRXXFVIXSRPFGQRALXXFPAHTRXYAYCGTFHTRCFL--LTRSQAAFP*TSSLDCIDP 599
           P    V+ +R +G RA+  F AHT   A  G F    F   +TR+         +   DP
Sbjct: 73  PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE---PRLIVVTDP 129

Query: 598 AQDHQPITEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 419
             D Q I EAS+VNIPVIALC+ DS L  VDIAIP N K   SIGL+W+LLAREVLR+RG
Sbjct: 130 RADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRG 189

Query: 418 VLPRDQRWDVVVDLFFYRXP 359
            L R   WDV+ DL+FYR P
Sbjct: 190 TLSRSAPWDVMPDLYFYRDP 209


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 577 TEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSI 467
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 423 VVCFPVTSAGMLWLICSSTVXPEESEKD 340
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 469 IGLMWWLLAREVLRLRGVLPRDQRWD 392
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 643 GIWLVKSTWCETSRNR 690
           G W  KS+WC ++ NR
Sbjct: 303 GNWYTKSSWCPSNSNR 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,598
Number of Sequences: 5004
Number of extensions: 53748
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)