Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E10
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0172 - 6131559-6131990                                           29   4.8  
11_06_0407 + 23205895-23206255,23206482-23206690                       29   6.3  
03_01_0243 + 1889885-1890049,1890158-1890217,1891113-1891226,189...    28   8.4  

>03_02_0172 - 6131559-6131990
          Length = 143

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 843 GLPXXGGQXGGXSXGTGXXGRKXGWXA 763
           G P  GG  GG   G G  G+K  W A
Sbjct: 54  GSPAGGGGGGGGGGGGGGGGKKSAWWA 80


>11_06_0407 + 23205895-23206255,23206482-23206690
          Length = 189

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 273 WSEVTSIREVGDDAPERRGWRAA 341
           WSEV SI     DA   RGW+ A
Sbjct: 10  WSEVASIAMANGDAVASRGWKEA 32


>03_01_0243 +
           1889885-1890049,1890158-1890217,1891113-1891226,
           1897117-1897182,1897272-1897379,1897476-1897559,
           1898042-1898143,1898282-1898395,1898474-1898554,
           1898931-1899050,1899398-1899493
          Length = 369

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 368 HHXXXXXXCRRAPPPPLXSVISNLSNTCDLTPLPEWSCER 249
           H       CR +   P   +  N++   DL  +PEW+ ER
Sbjct: 122 HDALEFGHCRLSLAVPKEGIFENINTLEDLANMPEWTQER 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,887
Number of Sequences: 37544
Number of extensions: 244839
Number of successful extensions: 832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)