Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E09
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   4.9  
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    28   8.5  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    28   8.5  

>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 445 PXRPXPXPAPTPGXLXPXPXTAXXXPRXP 531
           P  P P P PTP    P P      PR P
Sbjct: 54  PDSPPPPPLPTPTVTTPTPPPPPPAPRPP 82


>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +1

Query: 433 TXGXPXRPXPXPAPTPGXLXPXPXTAXXXPRXPTXWVXPXLP 558
           T   P  P P P P P  L P P T        +    P LP
Sbjct: 78  TPPSPPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILP 119


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 424 ASXTXGXPXRPXPXPAPTPGXLXPXPXTAXXXP 522
           AS     P  P P PAP P    P P  A   P
Sbjct: 197 ASAGAPPPQAPLPPPAPVPAPAPPPPPAAAPAP 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,937,608
Number of Sequences: 37544
Number of extensions: 116688
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)