Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E08
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.0  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   4.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.0  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   7.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.3  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   9.3  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.3  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 102 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 230
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 257 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 162
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -3

Query: 356 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 177
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 176 LSASIQASLPSSEIYRQL 123
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +3

Query: 474 HHSLENKGAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKS 638
           H S  NK A    P P      ++  P     A TP+   SS A  GL E++ KS
Sbjct: 511 HTSSLNKVAAAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKS 565


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = -2

Query: 666 SPDSIHQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPSAYLTPSSL 520
           +P S  +PP +  P PSIP  P     +P   PP+ S+AP     PSSL
Sbjct: 132 TPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPP---IPSSL 171


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = -2

Query: 711 PPXPGXSXTSTXIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPSAYLT 532
           PP    S TST  + +P S+  PP      P  P  P          PPL   AP A   
Sbjct: 404 PPLGNASRTSTPPVPTPPSL--PPSAPPSLP--PSAPPSLPMGAPAAPPLPPSAPIAPPL 459

Query: 531 PSSL 520
           P+ +
Sbjct: 460 PAGM 463


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 467 KLRALLVVIPRILRSPPPTHPLIEDV 390
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 144 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 46
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = -2

Query: 702 PGXSXTSTXIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEA---PSAYLT 532
           P     +   + SP +      +  P P  P++P      P+ +PPL S      S Y T
Sbjct: 130 PNNPLDTDPFLTSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYST 189

Query: 531 PSSLGM 514
            SS  +
Sbjct: 190 TSSTSL 195


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 495 GAKPLXPCPVTRG*DTLMEPLMTTEALTPARTPSSTASGGLMEMDVKSGV 644
           G + +  CP T+G    +EP++       A+TP+S    G+   +   GV
Sbjct: 81  GGRVVHDCPTTKGIGYFLEPILILCLF--AKTPTSLTLTGVTSSNEDIGV 128


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 332 LVTHKELALKVSSIIGTRVYVFDPSCY 252
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 729 SPLCIKPPXPGXSXTSTXIIKSPD-SIHQPPQT*HPFPS 616
           +PL   PP PG    S  ++  PD  + QP +T +  P+
Sbjct: 212 APLSGPPPQPGDIVFSNPMLGGPDHKVSQPSETENFLPT 250


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 472 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 386
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 117 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 218
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,905
Number of Sequences: 5004
Number of extensions: 55235
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)