Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_E08
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 35 0.084
06_03_1146 - 28004896-28005554,28005664-28005844 29 3.2
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 5.5
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 28 7.3
08_02_1615 + 28257275-28258428,28258523-28259144 28 7.3
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 9.6
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.6
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 9.6
>06_03_1310 + 29238644-29240260
Length = 538
Score = 34.7 bits (76), Expect = 0.084
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 669 KSPDSIHQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPSAYLTPS-SLGMXKGVSPP 493
+SP H PP+ P P P +P P PP SE+P + + PS S G SPP
Sbjct: 382 RSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASPP 439
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/72 (30%), Positives = 29/72 (40%)
Frame = -2
Query: 708 PXPGXSXTSTXIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPSAYLTP 529
P P S S + S+ P P PS ++P AP P S AP+A + P
Sbjct: 158 PSPASSPPSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSSPPAPAA-MAP 216
Query: 528 SSLGMXKGVSPP 493
S GV+ P
Sbjct: 217 SPSTTPGGVAQP 228
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 83 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 184
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 75 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 221
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Frame = -2
Query: 726 PLCIKPPXPGXSXTSTXIIKSPDSIHQ----PPQT*HPFPSIPLTPY*K--EFAPVLKPP 565
P + P P S ++ D+ HQ PP P P Y ++A +PP
Sbjct: 308 PTPLAPTIPQESYYPPSAVQPTDTTHQQYQAPPAPQSQAPPAPPQHYQTPPQYAQYSQPP 367
Query: 564 LSSEAPSAYLTPSSLGMXKGVSPPY 490
+S PS + PS + V+ PY
Sbjct: 368 PASANPSTAVPPSVHQQPEEVAAPY 392
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 242 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 63
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 62 ILHSF 48
+LHSF
Sbjct: 1408 LLHSF 1412
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Frame = -2
Query: 723 LCIKPPXPGXSXT-STXIIKSPDSIHQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAP 547
L + PP PG S + + SP S Q P T P P P + + L P P
Sbjct: 46 LPVSPPSPGYSDSPEPPLPDSPPS--QEPDTPEPAPPTPPQQQQQPWQSPLPPRREPAPP 103
Query: 546 SAYLTPSSLGMXKGVSPPYFQVN 478
+ P G PP +N
Sbjct: 104 RTVVPPQEPGWSSVPPPPARVIN 126
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = -2
Query: 747 AXXXAVSPLCIKPPXPGXSXTSTXIIKSPDSIHQPPQT*HPFPSI-PLTPY*KEFAPVLK 571
A + P + P P + + ++ P PP P P + PLTP P L
Sbjct: 21 AQRPGMPPAVVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLTPPPAIVPPALP 80
Query: 570 PP 565
PP
Sbjct: 81 PP 82
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 651 HQPPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPSAYLTPSSLGMXKGVSP 496
H PQ+ HP P P AP+ PP S P ++ + L K + P
Sbjct: 42 HHSPQS-HPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPLPP 92
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 642 PQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPS 544
P T +P PS L P PV+ PP+ S APS
Sbjct: 45 PLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPS 77
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 443 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 354
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = -2
Query: 645 PPQT*HPFPSIPLTPY*KEFAPVLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQ 466
PP P P P P P PP+ AP +++ +SP ++ES
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPPKATMARFPKLSPTESSRSEESS 412
Query: 465 ASRLISRHS 439
AS L S S
Sbjct: 413 ASELASESS 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,793,493
Number of Sequences: 37544
Number of extensions: 427122
Number of successful extensions: 1214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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