Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E07
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 457 PAQPPTLPXXXXXXPPPPXHXXVSXXSPXXXNPXPPXPP 573
           P+ PP+LP      PP P    ++   P      PP PP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +1

Query: 430 VXTXTXSXIPAQPPTLPXXXXXXPPPPXHXXVSXXSPXXXNPXPPXPP 573
           V T   + IP  PP         PPPP    V+   P    P PP PP
Sbjct: 741 VPTPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPP---PPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 466 PPTLPXXXXXXPPPPXHXXVSXXSPXXXNPXPPXPP 573
           PP  P       P P    V   +P    P PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,425
Number of Sequences: 5004
Number of extensions: 18928
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)