Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E06
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   4.8  
12_02_1174 - 26696869-26698191                                         28   8.4  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   8.4  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 690 PXXXPXXPXXPXXXXXXXXPXSXPPPXSPXXXRXXXXXXXSPPPQPXXXP 839
           P   P  P  P        P   PPP  P            PPP P   P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPP 593


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/55 (27%), Positives = 15/55 (27%)
 Frame = +3

Query: 690 PXXXPXXPXXPXXXXXXXXPXSXPPPXSPXXXRXXXXXXXSPPPQPXXXPXXXXP 854
           P   P  P  P        P   PP   P           SPPP P   P    P
Sbjct: 149 PPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKP 203


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/69 (26%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
 Frame = +3

Query: 654  PXXPXSXXXXXRPXXXPXXPXXPXXXXXXXXPXSX--PPPXSPXXXRXXXXXXXSPPPQP 827
            P  P        P   P  P  P        P S   PPP  P           +PPP P
Sbjct: 1143 PEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLP 1202

Query: 828  XXXPXXXXP 854
               P    P
Sbjct: 1203 IQPPPIPPP 1211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,322,076
Number of Sequences: 37544
Number of extensions: 127277
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)