Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E02
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    32   0.48 
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   4.5  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    29   5.9  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 21/81 (25%), Positives = 22/81 (27%)
 Frame = +1

Query: 580 PXGRXPPXPXPXXPQXNXGTIXPXNXPXXXXXPXXXXXXXGXXXXXXPXXPXXPXXXXXX 759
           P    PP P P  PQ N  +  P   P     P              P  P  P      
Sbjct: 563 PPPPPPPPPPPPLPQSNYASSQP---PPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPP 619

Query: 760 PXXAPXPXPXXXXTXXPPVXP 822
           P   P P P       PP  P
Sbjct: 620 PPPPPPPLPNHSVLPPPPPPP 640



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/77 (24%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
 Frame = +1

Query: 595 PPXPXPXXPQXNXGTIXPXNXPXXXXXPXXXXXXXGXXXXXXPXXPXX-PXXXXXXPXXA 771
           PP P P  P  N     P   P     P              P  P   P      P   
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPP 605

Query: 772 PXPXPXXXXTXXPPVXP 822
           P P P       PP  P
Sbjct: 606 PPPPPILPNRSVPPPPP 622


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/82 (24%), Positives = 20/82 (24%), Gaps = 1/82 (1%)
 Frame = +1

Query: 580  PXGRXPPXPXPXXPQXNXGTIXPXNXPXXXXXPXXXXXXXGXXXXXXPXXPXXPXXXXXX 759
            P    PP P P  P        P   P     P              P  P  P      
Sbjct: 1133 PLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGP 1192

Query: 760  PXX-APXPXPXXXXTXXPPVXP 822
            P   AP P P       PP  P
Sbjct: 1193 PPQPAPPPLPIQPPPIPPPPVP 1214


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/94 (23%), Positives = 23/94 (24%)
 Frame = +1

Query: 541 PRXAHXXXPXXIXPXGRXPPXPXPXXPQXNXGTIXPXNXPXXXXXPXXXXXXXGXXXXXX 720
           P  A    P    P    PP P P  P  N  +  P   P                    
Sbjct: 59  PPPASPPLPSATPPLAASPPPPPPPPPPRNSPS--PPKPPSQAAQSPLPPTTTTTTPPTA 116

Query: 721 PXXPXXPXXXXXXPXXAPXPXPXXXXTXXPPVXP 822
           P     P      P  AP P P    T   P  P
Sbjct: 117 PVPAAAPPPTAPSPYSAPSPTPTPTHTQPRPSPP 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,382
Number of Sequences: 37544
Number of extensions: 181984
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)