Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_E01
         (1213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.11 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 19/59 (32%), Positives = 20/59 (33%)
 Frame = +2

Query: 959  PPXPXFXXPAPXXPPXGSPXGXXLXGXPPPXFFXKKXFVFXPXPXGTPXXGCXXTPPPP 1135
            PP P    P P   P   P    + G PPP           P P G    G    PPPP
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP----------PPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.74
 Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
 Frame = +2

Query: 899  PSPXPXXKXXPPXXXGGKXSPPXPXFXXPAPXXPPXG-SPXGXXLXGXPPPXFFXKKXFV 1075
            P P P      P        PP P    P P  PP G +  G      PPP         
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792

Query: 1076 FXPXPXGTP 1102
            + P P   P
Sbjct: 793  YAPAPQAEP 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,043
Number of Sequences: 5004
Number of extensions: 30794
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)