Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D23
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    98   1e-21
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    92   7e-20
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.3  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   5.4  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   5.4  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   9.4  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   9.4  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 59/120 (49%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
 Frame = -1

Query: 719 YLXMKGXTTGTLQKWPPGETR-HSVVETL---RRPTRKRSTLLKPKCNRPIQSGLV*RST 552
           Y  MKG     L ++  GE R HS  ++L   +  +   +  L P    PI+ GL     
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAP--THPIRLGLA--LN 178

Query: 551 FPSFITRLSTPPARACHLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 372
           F  F   +   P RAC+LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 179 FSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
 Frame = -1

Query: 719 YLXMKGXTTGTLQKWPPGETRHSVVETLRRPTRKRSTLLKPKC--NRPIQSGLV*RSTFP 546
           Y  MKG     L ++  GE      ++     +  S +   +     P++ GL     F 
Sbjct: 122 YYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLA--LNFS 179

Query: 545 SFITRLSTPPARACHLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 372
            F   +   P  ACHLAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 180 VFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 530 LSTPPARACHLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 399
           L   PA  C++  Q  D  I   D  N+D ++ S L  +LL+ +
Sbjct: 204 LKVLPAVLCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSS 247


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 347
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 190 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 98
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 663 NQTFRRGDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVFYYEIINSP 517
           N+ F  GD   A +E  D    K Q    +R+G+ +++ +F+  +I  P
Sbjct: 526 NEKFVLGDDATA-EEIVDAETEKKQLDRSLRIGIFVSWIIFFILVIIVP 573


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 128 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 253
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 674 PPGETRHSVVETLRRPTRKRSTLLKPKCNRPI 579
           P   T+H+   T RRP R+  + LK     P+
Sbjct: 200 PLSSTKHAPQSTERRPVRRSESRLKQTNGEPL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,972
Number of Sequences: 5004
Number of extensions: 51070
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)