Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D21
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/76 (25%), Positives = 21/76 (27%)
 Frame = +2

Query: 395  PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
            P  G  P  +   G P  P P  A   P       P   PP    P  P     LP    
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP--VPPPSTAPPVPTPSAGLPPVPV 1231

Query: 575  TXTXXXPXPXXWAXXP 622
                  P P   +  P
Sbjct: 1232 PTAKAPPVPAPSSEAP 1247


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
 Frame = +2

Query: 449 PRPXXAXXXPXAXXXPXPGSXPPXXXLPXX-PXAXXPLPXXAXTXTXXXPXPXXWAXXPX 625
           P    A   P +   P P S PP   +P   P +  P+P  A       P P   A  P 
Sbjct: 124 PPSAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA-APV 181

Query: 626 XXXXXFPXXKNPXTPXPP 679
                 P   +   P PP
Sbjct: 182 KSPPSAPSLPSAVPPMPP 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,385
Number of Sequences: 5004
Number of extensions: 15195
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)