Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_D21
(857 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase... 31 7.1
BC035008-1|AAH35008.1| 652|Homo sapiens gametogenetin protein. 31 7.1
AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 7.1
AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 7.1
AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,... 31 7.1
AK093032-1|BAC04025.1| 652|Homo sapiens protein ( Homo sapiens ... 31 7.1
AF538035-1|AAP31500.1| 652|Homo sapiens gametogenetin protein 1... 31 7.1
>Y11354-1|CAA72189.1| 1083|Homo sapiens subunit of RNA polymerase II
transcription factor protein.
Length = 1083
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/118 (22%), Positives = 30/118 (25%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P GP P G P P A + P + P A PLP A
Sbjct: 172 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 231
Query: 575 TXTXXXPXPXXWAXXPXXXXXXFPXXKNPXTPXPPXXLXXXXXPXXXXXSLXXPXXXP 748
T P A P P P P P P +L P P
Sbjct: 232 PGTVIQTPPFVGAAAPPAPAAPSP----PAAPAPAAPAAAPPPPPPAPATLARPPGHP 285
>BC035008-1|AAH35008.1| 652|Homo sapiens gametogenetin protein.
Length = 652
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P P P PG RP A P P P + P P PLP
Sbjct: 386 PWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQELPPLPPPTP 445
Query: 575 TXTXXXP 595
T P
Sbjct: 446 PPTLQPP 452
>AY623115-1|AAT38111.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/118 (22%), Positives = 30/118 (25%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P GP P G P P A + P + P A PLP A
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233
Query: 575 TXTXXXPXPXXWAXXPXXXXXXFPXXKNPXTPXPPXXLXXXXXPXXXXXSLXXPXXXP 748
T P A P P P P P P +L P P
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSP----PAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
>AL137077-2|CAI11045.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/118 (22%), Positives = 30/118 (25%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P GP P G P P A + P + P A PLP A
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233
Query: 575 TXTXXXPXPXXWAXXPXXXXXXFPXXKNPXTPXPPXXLXXXXXPXXXXXSLXXPXXXP 748
T P A P P P P P P +L P P
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSP----PAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
>AL109911-2|CAI19182.1| 1085|Homo sapiens TAF4 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 135kD
protein.
Length = 1085
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/118 (22%), Positives = 30/118 (25%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P GP P G P P A + P + P A PLP A
Sbjct: 174 PGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233
Query: 575 TXTXXXPXPXXWAXXPXXXXXXFPXXKNPXTPXPPXXLXXXXXPXXXXXSLXXPXXXP 748
T P A P P P P P P +L P P
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAPSP----PAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
>AK093032-1|BAC04025.1| 652|Homo sapiens protein ( Homo sapiens
cDNA FLJ35713 fis, clone TESTI1000019. ).
Length = 652
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P P P PG RP A P P P + P P PLP
Sbjct: 386 PWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQELPPLPPPTP 445
Query: 575 TXTXXXP 595
T P
Sbjct: 446 PPTLQPP 452
>AF538035-1|AAP31500.1| 652|Homo sapiens gametogenetin protein 1a
protein.
Length = 652
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 395 PQXGPAPXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLPXXPXAXXPLPXXAX 574
P P P PG RP A P P P + P P PLP
Sbjct: 386 PWGSPPPPPEQIHSAPGPRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQELPPLPPPTP 445
Query: 575 TXTXXXP 595
T P
Sbjct: 446 PPTLQPP 452
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,121,966
Number of Sequences: 237096
Number of extensions: 1132806
Number of successful extensions: 6828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6680
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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