Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D21
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   5.6  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   5.6  
U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    28   9.8  

>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = +2

Query: 395 PQXGP-APXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLP 532
           P+ GP AP     R  PG P        P     P PG  PP    P
Sbjct: 783 PRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPP 829


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = +2

Query: 395 PQXGP-APXXRXXRGXPGXPRPXXAXXXPXAXXXPXPGSXPPXXXLP 532
           P+ GP AP     R  PG P        P     P PG  PP    P
Sbjct: 783 PRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAPP 829


>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
           protein T17H7.1 protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/54 (33%), Positives = 20/54 (37%)
 Frame = -3

Query: 555 GXXAXGQXGSXXXGGXLPGXGXXXAXGXXXAXXGRGXPGXPRXXRXQGAGPXWG 394
           G    GQ G     G   G G     G   A  GR  PG P     +G GP +G
Sbjct: 547 GRDGRGQ-GPDFGPGSQGGRGQDSDSGSQDAFPGRRGPGGPGGLGGRGQGPDFG 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,194,131
Number of Sequences: 27780
Number of extensions: 137741
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)