Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D19
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   124   1e-29
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   124   1e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.24 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   5.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  124 bits (300), Expect = 1e-29
 Identities = 70/130 (53%), Positives = 83/130 (63%), Gaps = 2/130 (1%)
 Frame = -1

Query: 756 IXSRPFGQRAVXXFAAHTGXTXIAGRFTXRCF--Y*PRSKLHSVNLVS*LYWTLHKTINP 583
           I SRP+G RAV  FAAHTG T IAGRFT   F  Y  R+      L+  +          
Sbjct: 80  ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT-YREPRLI--IVTDPRADAQA 136

Query: 582 LTEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 403
           + EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R  
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTT 196

Query: 402 RWDVVVDLFF 373
            W+V+ DL+F
Sbjct: 197 AWEVMPDLYF 206


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  124 bits (299), Expect = 1e-29
 Identities = 73/146 (50%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
 Frame = -1

Query: 756 IXSRPFGQRAVXXFAAHTGXTXIAGRFTXRCF--Y*PRSKLHSVNLVS*LYWTLHKTINP 583
           + +R +G RAV  FAAHTG T IAGRFT   F  Y  R+      L+  +          
Sbjct: 79  VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRT-YREPRLI--VVTDPRADAQA 135

Query: 582 LTEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQ 403
           + EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R  
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSA 195

Query: 402 RWDVVVDLFFXP*PLKKVKRMNNKPK 325
            WDV+ DL+F   P ++V+R     K
Sbjct: 196 PWDVMPDLYFYRDP-EEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 576 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 442
           EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 579 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 469
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 355 LQGSRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG-RLGVAW 498
           L G+R  +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 471 IGLMWWLLAREVLRLRGVLPRDQRWD 394
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,366
Number of Sequences: 5004
Number of extensions: 55239
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)