Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_D19
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 114 6e-26
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 113 1e-25
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.0
01_06_0867 - 32586254-32586574,32586756-32587172 29 4.0
06_03_0543 + 21967787-21970261 29 5.3
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 29 5.3
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 9.3
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 9.3
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 114 bits (275), Expect = 6e-26
Identities = 63/144 (43%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Frame = -1
Query: 750 SRPFGQRAVXXFAAHTGXTXIAGRFTXRCFY*PRSKLHSVNLVS*LYWTLHKTIN-PLTE 574
+RP+GQRAV FA +TG IAGR T F S + L T +T + P+ E
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTF--TNQLQTSFSEPRLLILTDPRTDHQPIKE 140
Query: 573 ASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 394
++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WD
Sbjct: 141 SALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWD 200
Query: 393 VVVDLFFXP*PLKKVKRMNNKPKE 322
V+VDLFF P + ++ P +
Sbjct: 201 VMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 113 bits (273), Expect = 1e-25
Identities = 61/127 (48%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Frame = -1
Query: 750 SRPFGQRAVXXFAAHTGXTXIAGRFTXRCFY*PRSKLHSVNLVS*LYWTLHKTIN-PLTE 574
+RP+GQRAV FA +TG IAGR T F S + L T +T + P+ E
Sbjct: 83 ARPYGQRAVLKFAQYTGAHAIAGRHTPGTF--TNQLQTSFSEPRLLILTDPRTDHQPIKE 140
Query: 573 ASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 394
++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WD
Sbjct: 141 SALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWD 200
Query: 393 VVVDLFF 373
V+VDLFF
Sbjct: 201 VMVDLFF 207
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 211 TRCSSCFWSTPCSRRMVCPGTR*VEHN 131
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 211 TRCSSCFWSTPCSRRMVCPGTR 146
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 340 HPFHFLQG--SRXEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNV 510
H LQG S E Q+ + AL + T PQHF QP H + + ++ V +D
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197
Query: 511 H 513
H
Sbjct: 198 H 198
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 465 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 376
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 325 LGLVVHPFHFLQGSRXEEQINHNIPALVTGKHT 423
LGLVV F+ L G R +NH +L+T K++
Sbjct: 311 LGLVVIVFYSLHGRRRISSMNHTDGSLITFKYS 343
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 211 TRCSSCFWSTPCSRRMVCPGTR*VEHN 131
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 458 HIKPIEWEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVNGL 589
H+ + L LH A S N ES LH+A+ EA V L
Sbjct: 1337 HLTEVHTRSLELHSAAESKNEEIESKLHEALEMAAQKEAEVKDL 1380
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 356 FRGHG*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKP 469
FRG G ++ T ++RG R N NNH +P
Sbjct: 232 FRGRGGGGRTRGTGHGFARGGKYRGYNEDINNNHQNRP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,394,328
Number of Sequences: 37544
Number of extensions: 384767
Number of successful extensions: 1033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -