Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D17
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    77   4e-15
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    75   9e-15
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   4.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 46/123 (37%), Positives = 52/123 (42%)
 Frame = -1

Query: 735 GXXXLXXXAXHTGXTPIXGRFTXGGFXNXIQXAVPXTXSXDCXGPCTRPSTHXXXXICQH 556
           G   +   A HTG T I GRFT G F N I              P               
Sbjct: 85  GHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNI 144

Query: 555 SCDXFVQHRLPXKICDXAIPCNTKSSHSIGLMWWLXAREVLRLRGVLPRDQRWDVVVDLF 376
                          D AIP N K   SIGL+W+L AREVLR+RG L R   WDV+ DL+
Sbjct: 145 PVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLY 204

Query: 375 FYR 367
           FYR
Sbjct: 205 FYR 207



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 23/54 (42%), Positives = 30/54 (55%)
 Frame = -2

Query: 635 FREXXLXIVXDXAQDHQPIXEXXYVNIXVXALCNTDSPXRFVTXLSHATPSLPT 474
           +RE  L +V D   D Q I E  +VNI V ALC+TDS       L+H   ++PT
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 46/125 (36%), Positives = 52/125 (41%)
 Frame = -1

Query: 741 PXGXXXLXXXAXHTGXTPIXGRFTXGGFXNXIQXAVPXTXSXDCXGPCTRPSTHXXXXIC 562
           P G   +   A HTG T I GRFT G F N I              P             
Sbjct: 84  PYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFV 143

Query: 561 QHSCDXFVQHRLPXKICDXAIPCNTKSSHSIGLMWWLXAREVLRLRGVLPRDQRWDVVVD 382
                            D AIP N K   SIGL W+L AREVLRLRG + R   W+V+ D
Sbjct: 144 NIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPD 203

Query: 381 LFFYR 367
           L+FYR
Sbjct: 204 LYFYR 208



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/37 (54%), Positives = 23/37 (62%)
 Frame = -2

Query: 635 FREXXLXIVXDXAQDHQPIXEXXYVNIXVXALCNTDS 525
           +RE  L IV D   D Q I E  +VNI V ALC+TDS
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDS 155


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 425 VVCFPVTSAGMLWLICSSTVXPEESEKD 342
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 314 APVVGGGGARPFHFLQGSR*KNKSTTTSQRWSRGSTPR 427
           AP V  GG++ F   QG + KN  +T +  +   S PR
Sbjct: 2   APRVAPGGSQQFLGKQGLKAKNPVSTPNSHFRSASNPR 39


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 471 IGLMWWLXAREVLRLRGVLPRDQRWD 394
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,783
Number of Sequences: 5004
Number of extensions: 30939
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)