Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D13
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.58 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   2.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 244 HETYGTAMRAESLALGGTRTDVKTGFHPRENPVEP--RLGRHTVSGAQEPPWHR 399
           HET+G+    E L +  T +D      PR++P+EP   + +++VS   +   H+
Sbjct: 266 HETFGSKKTME-LHIK-THSDSSVVGSPRDSPIEPEIEISQNSVSTGSDKENHK 317


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 449 CRVXGAPGHSTVGPVVKRCQGGS 381
           C   G PG S+ G VV    GGS
Sbjct: 16  CDNLGGPGSSSAGGVVTGASGGS 38


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 363 VSPETRFYGIFPGMKSRLN 307
           ++PE  F+G+ PG  S  N
Sbjct: 60  INPEYGFFGVAPGTSSATN 78


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 91  GAGVRHNPVRYPPS 50
           G G  H+P ++PPS
Sbjct: 397 GTGREHDPAKFPPS 410


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 289 GGTRTDVKTGFHPRENPVEPRLGR 360
           G T TDV+ G   R NP++  + +
Sbjct: 136 GDTVTDVEAGLASRTNPLDDSISQ 159


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 289 GGTRTDVKTGFHPRENPVEPRLGR 360
           G T TDV+ G   R NP++  + +
Sbjct: 131 GDTVTDVEAGLASRTNPLDDSISQ 154


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 603 RPWLGSVTWSWRFVRLRSAKGNGIPLRLLSAEGGVDGACER 481
           +P LG    S +FV  R    +  P   L  EGG++    R
Sbjct: 352 KPELGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSR 392


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 56  GVTDRVMSDSGASXXXXXXKRRTEVLHLPQFLTGD 160
           G+ DR   D+ A       + R  V  L QFLTG+
Sbjct: 629 GLRDRKYPDARAMGYPFDRQPRAGVETLAQFLTGN 663


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 138 SPNFSQETTP*KRR 179
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 554 GARKGMGSLFGSSAQKAGWTARARGRRSALVGTIECR 444
           GA   M   FGS+A  +   A A    +A  G   CR
Sbjct: 113 GATSSMVPGFGSTAASSAALAAAAAVDAATAGDKSCR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,689
Number of Sequences: 438
Number of extensions: 5504
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)