Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D11
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    31   0.009
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.80 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 758 NWPNXMQTCTFKFGFRMHNSDEMDFVIDKRIYSMFG 651
           +WP     C   FG  +H+ +E++  +DK+ + M G
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHMDG 210


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 316 SLISNLSNTCDLTPLPEWSCERSARWGACGRVL 218
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 764 VDNWPNXMQTCTFKFGFRMHNSDEMDFVI 678
           V  +P   QTC  KFG    N D++   +
Sbjct: 155 VTYFPFDQQTCIMKFGSWTFNGDQVSLAL 183


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 764 VDNWPNXMQTCTFKFGFRMHNSDEMD 687
           V+ +P   Q+C  KFG   +N  ++D
Sbjct: 162 VEYFPFDEQSCIMKFGSWTYNGAQVD 187



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 332 WRAAAACTRDTRGALPASPSRLDT 403
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 764 VDNWPNXMQTCTFKFGFRMHNSDEMD 687
           V+ +P   QTC  KFG   ++  ++D
Sbjct: 153 VEYFPFDEQTCVMKFGSWTYDGFQVD 178


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 764 VDNWPNXMQTCTFKFGFRMHNSDEMD 687
           V+ +P   QTC  KFG   ++  ++D
Sbjct: 157 VEYFPFDEQTCVLKFGSWTYDGFKVD 182


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 472 LAARHWTTTSCGFSVH 425
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 755 WPNXMQTCTFKFGFRMHNSDEMDFVID 675
           +P+  Q C  +     H +DEM F  D
Sbjct: 170 YPHDTQECKLQMESLSHTTDEMIFQWD 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,339
Number of Sequences: 438
Number of extensions: 2310
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)