Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_D09
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.76
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 1.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 3.0
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 4.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 4.0
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 26 5.3
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 5.3
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.3
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 7.0
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 7.0
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 25 9.3
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 25 9.3
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 362 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGC 231
+C G+ YGQ C S++S AG N T+ A C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -2
Query: 317 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVALGV--ACVEVVG 144
L +C S L FAG+ A PKI + +W P+ VA+ V AC+ +
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399
Query: 143 A 141
A
Sbjct: 400 A 400
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 464 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 354
ESI+ + V FK+R+D N E F EL +Q F C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = -2
Query: 212 LYQKWNKPIAGVALGVACVEVVGALFALCLANSIRNMDRRSRY*YFVHYKLVR 54
L KWN A + CV V L L NS N D Y V K VR
Sbjct: 41 LMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNSPENADVPKIYNLRVMNKFVR 93
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +3
Query: 411 VSVGSLFE*HADAIHNALLDALAVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTA 587
+SV + E DA+ A + +V +E++ + L DD + +ED + D+ + +
Sbjct: 26 LSVSTKEELGDDAL--AAEEGQSVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELE 83
Query: 588 SQERDHEHYSPDDYEDPRTDSK 653
+E + E +P+ + +S+
Sbjct: 84 EEEEEEEDATPEPVVTSKKNSR 105
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 450 IHNALL-DALAVGEEEDADHHLHNDDHQQED 539
+H+ +L D LA D D L D+H Q+D
Sbjct: 56 LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 483 GEEEDADHHLHNDDHQQEDCVRDDH 557
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 633 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 517
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 571 RIAPQHPKNAITNITAPTTMKIHG 642
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 492 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 629
E+ + N + Q+ DDH + SQE HEH D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 9.3
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -2
Query: 425 RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 267
R D+ +++ +AVF EL + +FE + + + ES +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 499 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR 654
L C + K +A +T Q LSR+ H KN + P I P++R
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,099
Number of Sequences: 5004
Number of extensions: 52720
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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