Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D07
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    27   2.2  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.0  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   3.0  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.0  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +1

Query: 166 TRRPIPSEVRTRMR*GGYRGQHYNQTARLTPRXAQPTEPSRRIEGSETSAVSVRQPVGPP 345
           T+ P P +  +++R GG        +   TPR A P   ++       S  S  QP  PP
Sbjct: 57  TKLPPPPKHASQLRAGG-------SSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPP 109

Query: 346 RRCRWCPGIPRWTRTSLPGR 405
           +     P +P     SLP R
Sbjct: 110 KE----PALPSRGTPSLPSR 125


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +1

Query: 169 RRPIPSEVRTRMR*GGYRGQHYNQTARLTPRXAQPTE----PSRRIEGSETSAVSVRQPV 336
           +R  P E+ TR +    R +   +T+ L P   +PT     P R + G+E  + ++ + +
Sbjct: 112 QRESPEEIETRKKDRKNRREMLKRTSALQPAAPKPTHKKPVPKRNV-GAERKS-TINEDL 169

Query: 337 GPPRRCRWCPGIPR 378
            PP +      IP+
Sbjct: 170 LPPNKVLLLQNIPQ 183


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 289 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 411
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 170 DVRSPPRSEPG*GRGATAVNTTTRRRGSPQGTPSRRSLR 286
           +++ PP    G GRGAT   TT    G  Q  PS+ S++
Sbjct: 10  NMQPPPNYVAGLGRGATGF-TTRSDLGPAQELPSQESIK 47


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 423 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 289
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 446
           QT P++  N P+  N PA +  +TP+   +   T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 390 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 307
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,139
Number of Sequences: 5004
Number of extensions: 44852
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)