Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_D07
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.2
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 31 1.2
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 31 1.2
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.1
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 2.8
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 2.8
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.8
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 2.8
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 3.6
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.8
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 6.4
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 6.4
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.4
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 387 SGPAGYSGTPAAPSGRPDGLPYRDG 313
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 384 GPAGYSGTPAAPSG-RPDGLPYRDGRRFRAFDSPRRL 277
GP+G SG PA P PDG P R G A P R+
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPGTTPNASCIPERV 162
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 384 GPAGYSGTPAAPSG-RPDGLPYRDGRRFRAFDSPRRL 277
GP+G SG PA P PDG P R G A P R+
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPGTTPNASCIPERV 162
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 387 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 307
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 408 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 313
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 408 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 313
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 408 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 313
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 147 SFSGWVLKSLGPRSAHNTMQIVESHIPRAPLLRG 46
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 147 SFSGWVLKSLGPRSAHNTMQIVESHIPRAPLLRG 46
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 387 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 307
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 147 SFSGWVLKSLGPRSAHNTMQIVESHIPRAPLLRG 46
S++GW S+ P+SA++ M ++E + R L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 387 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 301
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 423 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 313
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 384 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 292
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 384 GPAGYSGTPAAPSGRP--DGLPYRDGRR 307
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 384 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 286
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 441 SD*SDRSTVYRVPTRQAGS--GPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDSPRRLRR 271
SD D S+ P R +G GP G S P PSG P G P+ G R P R R
Sbjct: 52 SDLPDPSSPPPAP-RPSGQPPGPQGPSDLPG-PSGAPPGPPHPSGPPHRPHPHPSRRPR 108
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 6.4
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +2
Query: 38 TRSPRKRG----ARGM*DSTICMVL*ADRGPKDFRTHPLNDSPXTLTPDVRSPPRSEPG* 205
+RSPR+R ARG + RG + R P+ SP P R P S P
Sbjct: 47 SRSPRRRDTRPPARGGRSRSPIRRGSPPRGARADRDRPMRPSPSP--PRRRRPSPSPPRR 104
Query: 206 GRGATAVNTTTRRRGSPQGTPSRRS 280
R + + RRR SP+ +P+ RS
Sbjct: 105 DRRDRS-GSRQRRRASPRRSPAARS 128
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 405 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 310
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 405 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 310
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,256
Number of Sequences: 27780
Number of extensions: 309236
Number of successful extensions: 1403
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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