Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D04
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    31   0.91 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   3.7  
07_01_0080 + 587674-588510                                             29   3.7  
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    29   3.7  
08_02_1624 - 28334067-28335851                                         29   6.4  
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867...    28   8.5  
03_01_0515 - 3864796-3865425                                           28   8.5  

>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 774 TPPSPXXPXXSXXXPPPPXXPXP 842
           TPPSP  P      PPPP  P P
Sbjct: 78  TPPSPPPPPPPPPPPPPPLSPTP 100


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLP 628



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 622 PPPPPLPNHSVLPPPPPPPPPP 643


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 91  PPPPPPPPPSSGSPPPPPPPPP 112



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 92  PPPPPPPPSSGSPPPPPPPPPP 113


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 39  PPPPPSPVPSPAPPPPPHRPSP 60


>08_02_1624 - 28334067-28335851
          Length = 594

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 358 LXSQNXPRATPAAPEPHLQP 299
           L S   P+A P AP PH+QP
Sbjct: 36  LFSAQSPQAQPQAPPPHIQP 55


>11_04_0307 +
           16185405-16185713,16185847-16185942,16186626-16186730,
           16186938-16187090,16188395-16188478,16188566-16188694,
           16188986-16189165,16189555-16189677,16189678-16189794,
           16189889-16190053
          Length = 486

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 774 TPPSPXXPXXSXXXPPPPXXPXP 842
           +PP P  P  +   PPPP  P P
Sbjct: 29  SPPVPPDPYGADLSPPPPPPPKP 51


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  +   PPPP  P P
Sbjct: 71  PPPPPPPSVTSSPPPPPLPPPP 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,074,867
Number of Sequences: 37544
Number of extensions: 157767
Number of successful extensions: 1157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)