Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D04
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     28   7.5  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    28   7.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    28   7.5  

>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 795 PPPPPLPPISSGAPPPPPPPPP 816


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  S   PPPP  P P
Sbjct: 795 PPPPPLPPISSGAPPPPPPPPP 816


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  +   PPPP  P P
Sbjct: 235 PPPPLPPVGAGAPPPPPPPPPP 256



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P      PPPP  P P
Sbjct: 234 PPPPPLPPVGAGAPPPPPPPPP 255


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  +   PPPP  P P
Sbjct: 221 PPPPLPPVGAGAPPPPPPPPPP 242



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P      PPPP  P P
Sbjct: 220 PPPPPLPPVGAGAPPPPPPPPP 241


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P  +   PPPP  P P
Sbjct: 221 PPPPLPPVGAGAPPPPPPPPPP 242



 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 777 PPSPXXPXXSXXXPPPPXXPXP 842
           PP P  P      PPPP  P P
Sbjct: 220 PPPPPLPPVGAGAPPPPPPPPP 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,050,871
Number of Sequences: 27780
Number of extensions: 99604
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)