Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_D02
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.34 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.2  
03_05_0183 - 21681673-21682524                                         29   4.2  
01_06_0695 - 31292622-31293317                                         28   7.3  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    28   9.6  
05_02_0165 - 7256178-7256444                                           28   9.6  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    28   9.6  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 76  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 204
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 431 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 333
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 644 SQAFIATLLFDPSMSALPIIAKQNSPS 564
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 28  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 162
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 22  ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 201
           +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790

Query: 202 D 204
           +
Sbjct: 791 E 791


>05_02_0165 - 7256178-7256444
          Length = 88

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 461 LLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRE 294
           L S  R+ S G    A+G+       P+ GLC     +E  + E+GK   T   R+
Sbjct: 19  LASQPRHWSAGLAARAVGQRCSDLCQPARGLCTCIKPSEQRVREAGKHPGTARYRK 74


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 325 ARICSLWSPESREALNNVTLLVAFRVQNARRDVEA 221
           AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,547,182
Number of Sequences: 37544
Number of extensions: 454940
Number of successful extensions: 1212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)