Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_D01
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.15
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.15
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.5
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.15
Identities = 24/83 (28%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Frame = +2
Query: 545 PGPXXSFPXRAXXXXPPF-PXPXTSXPP---PXXSPXSTRAXQXPXXPXLXREXXXPAPT 712
P P + P R+ PP TS PP P P S P P AP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 713 PSXQXXXXPPXAXLRPXPPPLXP 781
PP P PPL P
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPP 471
Score = 29.9 bits (64), Expect = 0.46
Identities = 29/111 (26%), Positives = 32/111 (28%), Gaps = 8/111 (7%)
Frame = +2
Query: 473 PXLPXPPXEXLPXHXXXXTXXXXTPGPXXSFPXRAXXXXPPFPX--PXTSXPPPXXSPXS 646
P LP PP + P P P R PP +S PPP P S
Sbjct: 290 PPLP-PPSSRVSAAALAANKKRPPPPPP---PSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345
Query: 647 TRAXQXPXXPXLXREXXXPAPTPSXQXXXXPPXAXLR------PXPPPLXP 781
A P P P P + PP P PPP P
Sbjct: 346 NAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +2
Query: 611 TSXPPPXXSPXSTRAXQXPXXPXLXREXXXPAPTPSXQXXXXPPXAXLRPXPP 769
TS PP S S+R + P L P P PS PP + RP P
Sbjct: 227 TSAPPIPPSIPSSRPPER--VPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Frame = +2
Query: 545 PGPXXSFPXRAXXXXPPFPXPXTSXP--PPXXSPXSTRAXQXPXXPXLXREXXXPAPTPS 718
P P S + PP P S P PP + T P P L P+ PS
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP-----PSAPPS 430
Query: 719 XQXXXXPPXAXLRPXPPPLXP 781
P P PPL P
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPP 451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.15
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 4/113 (3%)
Frame = +2
Query: 446 PXGLXTLXXPXLPXPPXEXLPXHXXXXTXXXXTPGPXXSFPX-RAXXXXPPFPXPXTSXP 622
P G+ + P + PP +P P P + P + PP P P + P
Sbjct: 1088 PSGIPPVPKPSVAAPP---VPK---PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 623 PPXXSPXSTRAXQXPXXPXLXRE--XXXPAPTPSXQXXXXP-PXAXLRPXPPP 772
P S + P + + P P PS P P A + P PPP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 30.7 bits (66), Expect = 0.26
Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Frame = +2
Query: 545 PGPXXSFPXRAXXXXPPFPXPXTSXPP-PXXSPXSTRAXQXPXXPXLXRE--XXXPAPTP 715
P P + P A PP P P + PP P S P + + P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 716 SXQXXXXPPXAXLRPXPPP 772
S P P P P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAP 1155
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Frame = +2
Query: 566 PXRAXXXXPPFPXPXTSXPP-PXXS----PXSTRAXQXPXXPXLXREXXXPAPTPSXQXX 730
P A PP P P + PP P S P A P P P P PS
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP--PSEAPPVPKPSVGVP 1208
Query: 731 XXPPXAXLRPXPPP 772
PP + P P P
Sbjct: 1209 PVPPPSTAPPVPTP 1222
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = +2
Query: 590 PPFPXPXTSXPPPXXSPXSTRAXQXPXXPXLXREXXXPAPTPSXQXXXXPPXAXLRPXPP 769
PP P P T+ PP P ST P P P PS + P + P P
Sbjct: 1032 PPIPVPSTA--PPVPIPTST--PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
Query: 770 P 772
P
Sbjct: 1088 P 1088
Score = 29.9 bits (64), Expect = 0.46
Identities = 25/102 (24%), Positives = 30/102 (29%), Gaps = 5/102 (4%)
Frame = +2
Query: 482 PXPPXEXLPXHXXXXTXXXXTPGPXXSFPX-RAXXXXPPFPXPXTSXPPPXXS----PXS 646
P P P P P + P + PP P P + P P S P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 647 TRAXQXPXXPXLXREXXXPAPTPSXQXXXXPPXAXLRPXPPP 772
+ P P P P PS P + P PPP
Sbjct: 1173 APSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 29.5 bits (63), Expect = 0.61
Identities = 27/116 (23%), Positives = 35/116 (30%), Gaps = 7/116 (6%)
Frame = +2
Query: 446 PXGLXTLXXPXLPXPPX---EXLPXHXXXXTXXXXTPGPXXSFPX-RAXXXXPPFPXPXT 613
P G + P + PP P P P + P + PP P P +
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 614 SXPP-PXXSPXSTRAXQXPXXPXLXREXXX--PAPTPSXQXXXXPPXAXLRPXPPP 772
PP P + P + + P P PS P A L P P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 323 LRSLISNLXNTCDLTPLPEWSCERSAW 243
+RS+ L D+TP+ +W +RS W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 635 SPXSTRAXQXPXX-PXLXREXXXPAPTPSXQXXXXPP--XAXLRPXPPP 772
SP T A P P + PAPTP+ + PP + + P PP
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.5
Identities = 21/75 (28%), Positives = 28/75 (37%)
Frame = +2
Query: 551 PXXSFPXRAXXXXPPFPXPXTSXPPPXXSPXSTRAXQXPXXPXLXREXXXPAPTPSXQXX 730
P S P R PP P P ++ P P +P + P P + AP+
Sbjct: 139 PPTSAPPRPSI--PP-PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195
Query: 731 XXPPXAXLRPXPPPL 775
PP + PPPL
Sbjct: 196 PMPP----KVPPPPL 206
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 9.9
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +2
Query: 551 PXXSFPXRAXXXXPPFPXPXTSXPPPXXSPXSTRAXQXPXXPXLXREXXXPAPTPSXQXX 730
P P R PP P S PP P + + P P PAP P+
Sbjct: 36 PQWECPVRGLTIPPP-PSVDHSAPPSGPPPSYSNSAA-PATPAASASSAAPAPAPAASQN 93
Query: 731 XXPPXAXLRPXPP 769
A +P PP
Sbjct: 94 RAYGAAP-QPYPP 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,446
Number of Sequences: 5004
Number of extensions: 20182
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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