Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C23
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    31   1.2  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    31   1.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    31   1.2  
AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    29   3.8  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    29   3.8  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    28   6.6  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.8  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.8  

>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -3

Query: 709 PSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPS 530
           P+P  + T+T  +NP   TPTT   TS   N ++P+       +     + AP    +P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPT 548

Query: 529 SLGMXKGVSPP 497
           +       S P
Sbjct: 549 TTPTHTTASQP 559


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 712  PPSPAXSGTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 542
            P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+ 
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666

Query: 541  LTPSSLGMXKGVSPPY 494
                S       SP Y
Sbjct: 1667 SYSPSSPRYSPTSPTY 1682


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 709 PSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEAPSAYLT 536
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ AP+A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 535 PSS 527
           P+S
Sbjct: 548 PTS 550


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 712  PPSPAXSGTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 542
            P SP+ S TS + S     ++PT+P    TS S +P +P     +P   P   S +PS+ 
Sbjct: 1614 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1673

Query: 541  LTPSSLGMXKGVSPPY 494
                S       SP Y
Sbjct: 1674 SYSPSSPRYSPTSPTY 1689


>AF100656-3|AAF99968.1|  265|Caenorhabditis elegans Hypothetical
           protein F49F1.1 protein.
          Length = 265

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -3

Query: 730 SPLC---IKPPSPAXSGTSTRSSN--PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPL 566
           SP C   +K   PA  G+ +  +   P   T  TP+LT++++ P+T   K     + P  
Sbjct: 148 SPPCSDDVKIFCPATCGSCSNGTTGVPLVLTTLTPELTTVTVEPITSTLKPTTTTITPTT 207

Query: 565 SSEAPS 548
           +++ P+
Sbjct: 208 TTKLPT 213


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 730 SPLCIKPPSPAXSGTSTRSS--NPRFHTPTTPDL 635
           SP  ++ P+ + S T  ++S  NP++H PT  DL
Sbjct: 580 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 613


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 730 SPLCIKPPSPAXSGTSTRSS--NPRFHTPTTPDL 635
           SP  ++ P+ + S T  ++S  NP++H PT  DL
Sbjct: 482 SPDAVETPTNSGSSTPPQTSVRNPKYHVPTPTDL 515


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 712 PPSPAXSGTSTRSSNPRFHTPTTPDLTSI-SINPLTPY*KEFAPGLK 575
           PP P  SG       PR  TP  P L  +   NP T    EF  G++
Sbjct: 115 PPPPPPSGLGVAPQPPRPKTPVNPALAKLGGKNPGTVDRGEFLKGIQ 161


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 726 PYASSHPPLRXRVHQPDHQIPDS 658
           P +S HPPL    H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 733  VSPLCIKPP-SPAXSGTSTRSSNPRFHTPTTPDLTSISI 620
            VS  C++PP +P  + ++T ++ P+  T +T   TS +I
Sbjct: 1145 VSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAI 1183


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 715 KPPSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLT 608
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -3

Query: 667 PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 491
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 490 QVNDESQASRLISR 449
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -3

Query: 667 PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 491
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 490 QVNDESQASRLISR 449
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/89 (25%), Positives = 38/89 (42%)
 Frame = -3

Query: 766 ATPXSFGXXMAVSPLCIKPPSPAXSGTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFA 587
           ATP + G  M  S      P P  +G+ T  +      PT P  T+ +  P+T       
Sbjct: 507 ATPTTVGT-MTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVT------T 559

Query: 586 PGLKPPLSSEAPSAYLTPSSLGMXKGVSP 500
           P  +PP+++ +    LT  ++ +   V P
Sbjct: 560 PTSQPPVTTTSLLTTLTTPTVPVTTTVVP 588


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 571  PLSSEAPSAYLTPSSLGMXKGVSPP 497
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 571  PLSSEAPSAYLTPSSLGMXKGVSPP 497
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,730,207
Number of Sequences: 27780
Number of extensions: 350520
Number of successful extensions: 1216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)