Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C22
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          138   4e-33
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   133   1e-31
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    29   3.3  
02_04_0073 - 19471254-19472681                                         29   4.4  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    29   5.8  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   7.6  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  138 bits (335), Expect = 4e-33
 Identities = 74/170 (43%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
 Frame = -3

Query: 760 KGKMXTX-VVXR*GXLXXFNKDQGXIX-AFRNIPGVEXXXXXXXXXXXXXPGGHLGRFVI 587
           KGKM     + R G L  +  +   I  AFRN+PGV+             PGGHLGRFVI
Sbjct: 197 KGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVI 256

Query: 586 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 407
           WT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V R
Sbjct: 257 WTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKR 316

Query: 406 ATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 260
             ++ NPL N  A+LKLNPY    ++ A L E  R K  K   D++++ L
Sbjct: 317 REKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  133 bits (322), Expect = 1e-31
 Identities = 74/183 (40%), Positives = 104/183 (56%), Gaps = 3/183 (1%)
 Frame = -3

Query: 760 KGKMXTX-VVXR*GXLXXFNKDQGXIX-AFRNIPGVEXXXXXXXXXXXXXPGGHLGRFVI 587
           KGKM     + R G L  +  +   +  AFRN+PGV+             PGGHLGRFVI
Sbjct: 196 KGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVI 255

Query: 586 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIR 407
           WT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V  
Sbjct: 256 WTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKL 315

Query: 406 ATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMK 230
              + NPL N  A+LKLNPY    ++ A L E  R K      D++++ L   + +    
Sbjct: 316 REARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKA 375

Query: 229 AEK 221
           A K
Sbjct: 376 AGK 378


>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = -3

Query: 538 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 371
           K P+KQ K    PQ +++  D +R   + K  + +  L A +     + + K  P   + 
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468

Query: 370 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 203
           A LK       +++   L L R+K L     A+ +     +    +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 579 SPHSAGLTPYSGHGRHHRNKR 517
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 624 SWXREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFSSLM 451
           S+ R + LD+SSS  +P S+       H  HH+   +     S    WP       S ++
Sbjct: 379 SFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPSPML 438

Query: 450 RSGRSSVLPTNA 415
            SG    LP +A
Sbjct: 439 SSGLGLGLPYDA 450


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 610 GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 479
           G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 675 GCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,846
Number of Sequences: 37544
Number of extensions: 331336
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)