Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_C20
(787 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499137-1|AAQ07403.1| 903|Homo sapiens synaptopodin protein. 35 0.29
AF499136-1|AAQ07402.1| 903|Homo sapiens synaptopodin protein. 35 0.29
AB028952-1|BAA82981.2| 1015|Homo sapiens KIAA1029 protein protein. 35 0.29
L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 33 0.88
CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 33 0.88
BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 33 0.88
BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 33 0.88
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 4.7
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 4.7
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 4.7
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 4.7
>AF499137-1|AAQ07403.1| 903|Homo sapiens synaptopodin protein.
Length = 903
Score = 35.1 bits (77), Expect = 0.29
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 5/173 (2%)
Frame = -2
Query: 687 FVVEANCPXRNKVTXLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYSITILQDSRRSALVP 508
F V + P R L + Y P + V + + P+QL P S+ +L + A V
Sbjct: 529 FRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLR-P---SLFVLSPIKEPAKVS 584
Query: 507 *ECGSPRRPGARLF**VSTVGIAAPF*EGGTT*EP----PHRSRWKLHTRPSRPNGKP-S 343
SP +P S++ + +G P P RS L+T P + + +P +
Sbjct: 585 PRAASPAKP--------SSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTA 636
Query: 342 TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 184
SP YG S R R+ + PS +T+ + E R L SP
Sbjct: 637 VSPP---YGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSP 686
>AF499136-1|AAQ07402.1| 903|Homo sapiens synaptopodin protein.
Length = 903
Score = 35.1 bits (77), Expect = 0.29
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 5/173 (2%)
Frame = -2
Query: 687 FVVEANCPXRNKVTXLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYSITILQDSRRSALVP 508
F V + P R L + Y P + V + + P+QL P S+ +L + A V
Sbjct: 529 FRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLR-P---SLFVLSPIKEPAKVS 584
Query: 507 *ECGSPRRPGARLF**VSTVGIAAPF*EGGTT*EP----PHRSRWKLHTRPSRPNGKP-S 343
SP +P S++ + +G P P RS L+T P + + +P +
Sbjct: 585 PRAASPAKP--------SSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTA 636
Query: 342 TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 184
SP YG S R R+ + PS +T+ + E R L SP
Sbjct: 637 VSPP---YGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSP 686
>AB028952-1|BAA82981.2| 1015|Homo sapiens KIAA1029 protein protein.
Length = 1015
Score = 35.1 bits (77), Expect = 0.29
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 5/173 (2%)
Frame = -2
Query: 687 FVVEANCPXRNKVTXLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYSITILQDSRRSALVP 508
F V + P R L + Y P + V + + P+QL P S+ +L + A V
Sbjct: 641 FRVASRSPARTPPASLYHGYLPENGVLRPEPTKQPPYQLR-P---SLFVLSPIKEPAKVS 696
Query: 507 *ECGSPRRPGARLF**VSTVGIAAPF*EGGTT*EP----PHRSRWKLHTRPSRPNGKP-S 343
SP +P S++ + +G P P RS L+T P + + +P +
Sbjct: 697 PRAASPAKP--------SSLDLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTA 748
Query: 342 TSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 184
SP YG S R R+ + PS +T+ + E R L SP
Sbjct: 749 VSPP---YGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSP 798
>L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha
protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.88
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 627 TPRHDVCKRSVRSRSPHQLEIPSGYS 550
TP + KRSV +RSPHQL PS +S
Sbjct: 127 TPETPLTKRSVSTRSPHQLLSPSSFS 152
>CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.88
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 627 TPRHDVCKRSVRSRSPHQLEIPSGYS 550
TP + KRSV +RSPHQL PS +S
Sbjct: 127 TPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.88
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 627 TPRHDVCKRSVRSRSPHQLEIPSGYS 550
TP + KRSV +RSPHQL PS +S
Sbjct: 127 TPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 33.5 bits (73), Expect = 0.88
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -2
Query: 627 TPRHDVCKRSVRSRSPHQLEIPSGYS 550
TP + KRSV +RSPHQL PS +S
Sbjct: 127 TPETPLTKRSVSTRSPHQLLSPSSFS 152
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 354 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 220
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 354 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 220
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 354 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 220
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.7
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 354 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 220
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,711,708
Number of Sequences: 237096
Number of extensions: 2122483
Number of successful extensions: 8740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8726
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -