Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C15
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   4.7  
11_06_0610 - 25449085-25453284                                         29   6.2  
11_01_0385 + 2915532-2916482                                           29   6.2  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    28   8.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.2  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   8.2  

>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +3

Query: 588  PXPXRPRVXXRPPSXPXXSCXXXKLPXLPPLSXXPRXSPPAPGXXXPXXXSXXP 749
            P P  P +   PP  P  S    + P  PPL   P   PP P    P      P
Sbjct: 1172 PPPLSPSLPPPPPPPPLPSGPPPQ-PAPPPLPIQPPPIPPPPVPSSPSSLGYQP 1224


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = +3

Query: 594 PXRPRVXXRPPSXPXXSCXXXKLPXLPPLSXXPRXSPPAPGXXXPXXXSXXPXXSXXXP 770
           P  P      PS P  S    K P +PP S     SPP P    P      P      P
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPPIPPTS---HTSPPTPEEYTPSPPKSSPPEEKSPP 782


>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = +3

Query: 594 PXRPRVXXRPPSXPXXSCXXXKLPXLPPLSXXPRXSP--PAPGXXXP 728
           P  P     PP  P       K P LPP    P  +P  P PG   P
Sbjct: 223 PPLPPFPSHPPPTPAWPQPGNKWPPLPPFPSHPPPTPAWPHPGNQWP 269


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +3

Query: 588 PXPXRPRVXXRPPSXPXXSCXXXKLPXLPPLSXXPRXSPPAPGXXXP 728
           P P  PR   R    P         P  PP S  P  +PP P    P
Sbjct: 74  PPPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAP 120


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/62 (24%), Positives = 19/62 (30%)
 Frame = +3

Query: 564 IXSXIXXXPXPXRPRVXXRPPSXPXXSCXXXKLPXLPPLSXXPRXSPPAPGXXXPXXXSX 743
           + S     P P +P     PP  P  +      P  PP     +  PP P    P     
Sbjct: 308 VASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367

Query: 744 XP 749
            P
Sbjct: 368 PP 369


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 588 PXPXRPRVXXRPPSXPXXSCXXXKLPXLPPLSXXPRXSPPAPGXXXP 728
           P P  P++       P        LP LP +S  P  +PP P    P
Sbjct: 544 PPPNMPQLQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHP 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,722
Number of Sequences: 37544
Number of extensions: 168483
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)