Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_C13
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   2.8  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.0  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.0  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   5.0  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   6.6  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   6.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.6  

>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 263 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 123
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 677 SKMSLRNKVTLYKTXIRPRHDLCKCSVRSRGPHTLKILSN 558
           S  SL +K       IRP +++   S  SR P T  + SN
Sbjct: 292 STASLSDKKNPGSVHIRPNNEVAPSSAPSRAPSTTSVESN 331


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 453 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 340
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -1

Query: 347 STSP*TRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 168
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 167 RFRSGGRFC 141
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 158 SGGRFCEARLLLGFVLATSSGLSPVSSPTKVKA 60
           S G F +A   +   LA +SGLS + + T VKA
Sbjct: 449 SMGAFADALDTIPLALAENSGLSSIEALTAVKA 481


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 427 KAARHENPLIVAAGNYIPDPANRME 353
           K A +  P++++ G ++P P+NR +
Sbjct: 75  KIASNLGPMVISDGLHVPHPSNRFD 99


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 334 KHVISDPPDPLTVLLGTSSTGH 269
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,501
Number of Sequences: 5004
Number of extensions: 47528
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)