Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_C10
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 28 1.4
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 3.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 4.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 5.6
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 7.4
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.4
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 9.8
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 25 9.8
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +3
Query: 18 TNHLAQGSSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS 197
T+ A S+ D +PS P +SS+ S RH + +L S + D
Sbjct: 104 TSGCASAHSVGYQNIDNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG 163
Query: 198 IDLRDPNGLRRRVSR 242
LRD + + RVS+
Sbjct: 164 --LRDRHIRKVRVSQ 176
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 3.2
Identities = 25/115 (21%), Positives = 48/115 (41%)
Frame = -2
Query: 400 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 221
A A+ +A A +AEA E+ K+++ EP+++ +K+ + R
Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148
Query: 220 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 56
R+ + F+ + R G ++C S V D S+ + LG ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 33 QGSSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDL 158
QG+S S +A+L ST + S + SEP+ + E+ L
Sbjct: 225 QGASTASSSREASLDSTIKQPLSASLLESSEPKEKEEIVGSL 266
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.6
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Frame = -2
Query: 466 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 287
S+T+ R H L ++ L S G +S +++ GK+ V P +
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326
Query: 286 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 110
DF + +S S+ ++S G R R R +G NS C + V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379
Query: 109 DDFRSWRGVVLGR 71
+ R RG GR
Sbjct: 380 SNARKPRGRGRGR 392
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 39 SSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRS 164
SSL+R +H + L P +E KSS + R ++ L ++S
Sbjct: 83 SSLSRLRHPSLLQVVEPLEESKSSMSFVTRRIQSMLQDFIKS 124
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 481 TCRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 350
T C A + +S G +VHA RAA + A CL K
Sbjct: 51 TIPCLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 472 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 323
CD+ + S G L H + R GG + + + N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 9.8
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 30 AQGSSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKKKTDSIDL 206
+ SS SQH L P E+KS D S PR + + R R K D+ +L
Sbjct: 136 SSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLKNPDAWNL 194
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 421 PNVRNCGSSRTEQYYYRNDKSSVG 492
P V N GSSRT+ +Y R + G
Sbjct: 86 PRVINLGSSRTDWFYERKKFKNAG 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,591
Number of Sequences: 5004
Number of extensions: 67444
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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